hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06261857/chunk_1/iprscan-20080502-06261857.nocrc
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Query sequence: KIAA0558
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00327                                                  89.5    4.1e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00327    1/1     289   464 ..     1   193 []    89.5  4.1e-22

Alignments of top-scoring domains:
SM00327: domain 1 of 1, from 289 to 464: score 89.5, E = 4.1e-22
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld.gdrvglvqFssd
                      p+D v+++D+SgS++g ++ ++k+ v +++++l+++d+v +  F+++
    KIAA0558   289    PKDMVIIVDVSGSVSGLTLKLMKTSVcEMLDTLSdDDYVNVASFNEK 335  

                   vrvefpln......sqskdallealaslsykglkdyslgggTnlg.ALqy
                   ++ ++ +++  + + ++k+ ++ea++++         ++g T    + +y
    KIAA0558   336 AQPVSCFThlvqanVRNKKVFKEAVQGMV--------AKGTTGYKaGFEY 377  

                   alenlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedilea
                   a+++l+++   + +          ++k ++++TDG  +       +++++
    KIAA0558   378 AFDQLQNSNITrAN----------CNKMIMMFTDGGED-------RVQDV 410  

                   akelkrsg..vkvfvigvgna..de.elkeiasep.gehvffdvsdvedl
                   +++    +++v+vf++ vg+++ d + l+ +a++++g ++          
    KIAA0558   411 FEKYNWPNrtVRVFTFSVGQHnyDVtPLQWMACANkGYYFE--------I 452  

                   pslldllidlll<-*
                   ps+ +  i+ ++   
    KIAA0558   453 PSIGAIRINTQE    464  

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