hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06243568/chunk_1/iprscan-20080502-06243568.nocrc
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Query sequence: KIAA0557
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00431                                                 248.6    5.1e-70   1
SM00355                                                 145.9    4.1e-39   5

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00431      1/1      59   165 ..     1   113 []   248.6  5.1e-70
SM00355      1/5     338   360 ..     1    23 []    30.5  0.00024
SM00355      2/5     366   388 ..     1    23 []    29.5  0.00047
SM00355      3/5     394   416 ..     1    23 []    31.5  0.00012
SM00355      4/5     422   444 ..     1    23 []    27.3    0.002
SM00355      5/5     450   472 ..     1    23 []    27.2   0.0023

Alignments of top-scoring domains:
SM00431: domain 1 of 1, from 59 to 165: score 248.6, E = 5.1e-70
                   *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL
                      pE+fRq+FR F+YqE++GPREALSRL+ELC++WLRPEl+TKEQILEL
    KIAA0557    59    PETFRQLFRLFCYQEVAGPREALSRLWELCCRWLRPELRTKEQILEL 105  

                   LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah
                   LVLEQFLT+LPgE+Qa+Vre++PeSGEEAV+L+E+L+r++++++      
    KIAA0557   106 LVLEQFLTVLPGEIQARVREQQPESGEEAVVLVEGLQRKPRKHR------ 149  

                   vhgqevLleemvplga<-*
                   ++g e+L++++vplg    
    KIAA0557   150 QRGSELLSDDEVPLGI    165  

SM00355: domain 1 of 5, from 338 to 360: score 30.5, E = 0.00024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cp+ Cgk fs  ++L++H+r+H   
    KIAA0557   338    YTCPE-CGKGFSKTsHLTKHQRTH    360  

SM00355: domain 2 of 5, from 366 to 388: score 29.5, E = 0.00047
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + Cgk fs+++++  H+rvH   
    KIAA0557   366    YKCLV-CGKGFSDRsNFSTHQRVH    388  

SM00355: domain 3 of 5, from 394 to 416: score 31.5, E = 0.00012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y Cp+ Cgk+fs+ ++L+ H r+H   
    KIAA0557   394    YPCPE-CGKRFSQSsSLVIHRRTH    416  

SM00355: domain 4 of 5, from 422 to 444: score 27.3, E = 0.002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+f++ +++  H r+H   
    KIAA0557   422    YACTQ-CGKRFNNSsHFSAHRRTH    444  

SM00355: domain 5 of 5, from 450 to 472: score 27.2, E = 0.0023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cp  Cg+ f++ ++L +H+r+H   
    KIAA0557   450    YTCPA-CGRGFRRGtDLHKHQRTH    472  

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