hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06243568/chunk_1/iprscan-20080502-06243568.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0557 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02023.7.ls SCAN domain 195.6 1.1e-55 1 PF02023.7.fs SCAN domain 193.7 4.1e-55 1 PF00096.16.ls Zinc finger, C2H2 type 174.4 2.7e-49 5 PF00096.16.fs Zinc finger, C2H2 type 164.5 2.5e-46 5 PF01352.17.fs KRAB box 23.3 7.7e-06 1 PF07754.2.fs Domain of unknown function (DUF1610) 25.6 7.9e-06 4 PF01352.17.ls KRAB box 17.3 0.0063 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02023.7.ls 1/1 57 152 .. 1 96 [] 195.6 1.1e-55 PF02023.7.fs 1/1 57 152 .. 1 96 [] 193.7 4.1e-55 PF01352.17.fs 1/1 237 260 .. 1 24 [. 23.3 7.7e-06 PF01352.17.ls 1/1 237 273 .. 1 41 [] 17.3 0.0063 PF00096.16.ls 1/5 338 360 .. 1 24 [] 38.0 3e-08 PF00096.16.fs 1/5 338 360 .. 1 24 [] 36.0 1e-07 PF00096.16.ls 2/5 366 388 .. 1 24 [] 34.6 3.2e-07 PF00096.16.fs 2/5 366 388 .. 1 24 [] 32.6 7.1e-07 PF00096.16.ls 3/5 394 416 .. 1 24 [] 38.7 1.9e-08 PF00096.16.fs 3/5 394 416 .. 1 24 [] 36.7 6.8e-08 PF00096.16.ls 4/5 422 444 .. 1 24 [] 31.9 2.1e-06 PF00096.16.fs 4/5 422 444 .. 1 24 [] 29.9 3.3e-06 PF00096.16.fs 5/5 450 472 .. 1 24 [] 29.3 4.8e-06 PF00096.16.ls 5/5 450 472 .. 1 24 [] 31.3 3.2e-06 Alignments of top-scoring domains: PF02023.7.ls: domain 1 of 1, from 57 to 152: score 195.6, E = 1.1e-55 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL pspE+fRq FR f+Yqe++GPrEALsrL eLC++WLrPE++TKEQIL KIAA0557 57 PSPETFRQLFRLFCYQEVAGPREALSRLWELCCRWLRPELRTKEQIL 103 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLt+LP+E+Qa+V+e++PeSgEEaV L+E L+r + +q KIAA0557 104 ELLVLEQFLTVLPGEIQARVREQQPESGEEAVVLVEGLQRKPRKHRQRG 152 -* KIAA0557 - - PF02023.7.fs: domain 1 of 1, from 57 to 152: score 193.7, E = 4.1e-55 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL pspE+fRq FR f+Yqe++GPrEALsrL eLC++WLrPE++TKEQIL KIAA0557 57 PSPETFRQLFRLFCYQEVAGPREALSRLWELCCRWLRPELRTKEQIL 103 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLt+LP+E+Qa+V+e++PeSgEEaV L+E L+r + +q KIAA0557 104 ELLVLEQFLTVLPGEIQARVREQQPESGEEAVVLVEGLQRKPRKHRQRG 152 -* KIAA0557 - - PF01352.17.fs: domain 1 of 1, from 237 to 260: score 23.3, E = 7.7e-06 *->VtFeDVaVdFtqEEWelLdpaQrn<-* V eDVaV+ + EE ++ dpaQr+ KIAA0557 237 VNLEDVAVYLSGEEPRCMDPAQRD 260 PF01352.17.ls: domain 1 of 1, from 237 to 273: score 17.3, E = 0.0063 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V eDVaV+ + EE ++ dpaQr d lEN + + l+ KIAA0557 237 VNLEDVAVYLSGEEPRCMDPAQR----DAPLENEGPGIQLE 273 PF00096.16.ls: domain 1 of 5, from 338 to 360: score 38.0, E = 3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cgk Fs s+L++H+rtH KIAA0557 338 YTCP-ECGKGFSKTSHLTKHQRTH 360 PF00096.16.fs: domain 1 of 5, from 338 to 360: score 36.0, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cgk Fs s+L++H+rtH KIAA0557 338 YTCP-ECGKGFSKTSHLTKHQRTH 360 PF00096.16.ls: domain 2 of 5, from 366 to 388: score 34.6, E = 3.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk Fs++sn+ +H+r+H KIAA0557 366 YKCL-VCGKGFSDRSNFSTHQRVH 388 PF00096.16.fs: domain 2 of 5, from 366 to 388: score 32.6, E = 7.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk Fs++sn+ +H+r+H KIAA0557 366 YKCL-VCGKGFSDRSNFSTHQRVH 388 PF00096.16.ls: domain 3 of 5, from 394 to 416: score 38.7, E = 1.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp +Cgk+Fs++s+L H+rtH KIAA0557 394 YPCP-ECGKRFSQSSSLVIHRRTH 416 PF00096.16.fs: domain 3 of 5, from 394 to 416: score 36.7, E = 6.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp +Cgk+Fs++s+L H+rtH KIAA0557 394 YPCP-ECGKRFSQSSSLVIHRRTH 416 PF00096.16.ls: domain 4 of 5, from 422 to 444: score 31.9, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+++s++ +H+rtH KIAA0557 422 YACT-QCGKRFNNSSHFSAHRRTH 444 PF00096.16.fs: domain 4 of 5, from 422 to 444: score 29.9, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+++s++ +H+rtH KIAA0557 422 YACT-QCGKRFNNSSHFSAHRRTH 444 PF00096.16.fs: domain 5 of 5, from 450 to 472: score 29.3, E = 4.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp Cg+ F+r +L++H+rtH KIAA0557 450 YTCP-ACGRGFRRGTDLHKHQRTH 472 PF00096.16.ls: domain 5 of 5, from 450 to 472: score 31.3, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp Cg+ F+r +L++H+rtH KIAA0557 450 YTCP-ACGRGFRRGTDLHKHQRTH 472 //