hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06004313/chunk_1/iprscan-20080502-06004313.nocrc
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Query sequence: KIAA0543
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01352.17.fs KRAB box                                        86.1    7.8e-24   1
PF01352.17.ls KRAB box                                        88.1    2.4e-23   1
PF05699.5.fs hAT family dimerisation domain                  19.6    4.8e-05   1
PF05699.5.ls hAT family dimerisation domain                  18.5    0.00034   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01352.17.fs   1/1     275   315 ..     1    41 []    86.1  7.8e-24
PF01352.17.ls   1/1     275   315 ..     1    41 []    88.1  2.4e-23
PF05699.5.ls   1/1     931  1014 ..     1    94 []    18.5  0.00034
PF05699.5.fs   1/1     958  1008 ..    36    88 ..    19.6  4.8e-05

Alignments of top-scoring domains:
PF01352.17.fs: domain 1 of 1, from 275 to 315: score 86.1, E = 7.8e-24
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      V FeDVaV+Ft+EEW+ Ld  Q++LYrdVM+ Ny+ L+Slg   
    KIAA0543   275    VVFEDVAVYFTREEWGMLDKRQKELYRDVMRMNYELLASLG    315  

PF01352.17.ls: domain 1 of 1, from 275 to 315: score 88.1, E = 2.4e-23
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                      V FeDVaV+Ft+EEW+ Ld  Q++LYrdVM+ Ny+ L+Slg   
    KIAA0543   275    VVFEDVAVYFTREEWGMLDKRQKELYRDVMRMNYELLASLG    315  

PF05699.5.ls: domain 1 of 1, from 931 to 1014: score 18.5, E = 0.00034
                   *->ELdkYlselpvlprnteprgledfdvLeWWkeaqnssryPiLsklAr
                       L+++l   + + ++       +f  L+    +  + r+P+Lskl  
    KIAA0543   931    LLEEWLGL-KTIAQHL------PFSMLCKNA-LAQHCRFPLLSKLMA 969  

                   diLsiPvssaasErsFStgklgrvldesrnrlepenveaLlcledwl<-*
                    + ++P+s+  +Er F ++   r+ ++ r++l  e +++L+ +  +    
    KIAA0543   970 VVVCVPISTSCCERGFKAM--NRIRTDERTKLSNEVLNMLMMTAVNG    1014 

PF05699.5.fs: domain 1 of 1, from 958 to 1008: score 19.6, E = 4.8e-05
                   *->ssryPiLsklArdiLsiPvssaasErsFStgklgrvldesrnrlepe
                      + r+P+Lskl   + ++P+s+  +Er F ++   r+ ++ r++l  e
    KIAA0543   958    HCRFPLLSKLMAVVVCVPISTSCCERGFKAM--NRIRTDERTKLSNE 1002 

                   nveaLl<-*
                    +++L+   
    KIAA0543  1003 VLNMLM    1008 

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