hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05572272/chunk_1/iprscan-20080502-05572272.nocrc
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Query sequence: KIAA0541
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 151.8    7.2e-41   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7      15    57 ..     1    46 []    22.9    0.046
SM00320    2/7      63   105 ..     1    46 []    22.5    0.059
SM00320    3/7     218   252 ..     1    46 []     1.3    3e+02
SM00320    4/7     463   508 ..     1    46 []    32.3  6.5e-05
SM00320    5/7     511   556 ..     1    46 []     5.2       74
SM00320    6/7     559   598 ..     1    46 []    30.5  0.00023
SM00320    7/7    1393  1433 ..     1    46 []    37.0  2.5e-06

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 15 to 57: score 22.9, E = 0.046
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                      +  l  +l ++++ t+   +++v   +dg        +++g++Dg+i
    KIAA0541    15    SlVLPIVLWgrkAPTH--CISAVLLTDDG------ATIVTGChDGQI 53   

                   rlWd<-*
                   +lWd   
    KIAA0541    54 CLWD    57   

SM00320: domain 2 of 7, from 63 to 105: score 22.5, E = 0.059
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++ + l gHt+  ++t+++    +++   +++++s+s+ g  +lW
    KIAA0541    63    QiNPRALLFGHTA--SITCLSKACASSD---KQYIVSASeSGEMCLW 104  

                   d<-*
                   d   
    KIAA0541   105 D    105  

SM00320: domain 3 of 7, from 218 to 252: score 1.3, E = 3e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                      ++k+++  +   +  +++ +af +        +ll+++s +  r++d
    KIAA0541   218    EsKPIYCQN--CQ--SISFCAFTQR-------SLLVVCS-KYWRVFD 252  

                   <-*
                      
    KIAA0541     -     -    

SM00320: domain 4 of 7, from 463 to 508: score 32.3, E = 6.5e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + + rtl+gH++   Vt++ + +  +++++ ++l+sg+ D ++ +W
    KIAA0541   463    GwPPHRTLRGHRN--KVTCLLYPHQVSARYDQRYLISGGvDFSVIIW 507  

                   d<-*
                   d   
    KIAA0541   508 D    508  

SM00320: domain 5 of 7, from 511 to 556: score 5.2, E = 74
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++  +++  H g  ++t + + p + s    ++++s  +D+++ l 
    KIAA0541   511    SgEMKHIFCVHGG--EITQLLVPPENCSARVQHCICSVAsDHSVGLL 555  

                   d<-*
                   +   
    KIAA0541   556 S    556  

SM00320: domain 6 of 7, from 559 to 598: score 30.5, E = 0.00023
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+++  + H    p+  +++ p++      ++l++g++Dg++++W
    KIAA0541   559    EkKCIMLASRHLF--PIQVIKWRPSD------DYLVVGCsDGSVYVW 597  

                   d<-*
                       
    KIAA0541   598 Q    598  

SM00320: domain 7 of 7, from 1393 to 1433: score 37.0, E = 2.5e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs..Dgtirl
                       +  ++t++gH+g  p+t+vaf pdg      ++la+ s++D++i +
    KIAA0541  1393    RtGKCQTIHGHKG--PITAVAFAPDG------RYLATYSntDSHISF 1431 

                   Wd<-*
                   W    
    KIAA0541  1432 WQ    1433 

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