hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05572272/chunk_1/iprscan-20080502-05572272.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0541
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       126.6    6.2e-35   6
PF00400.22.fs WD domain, G-beta repeat                       121.9    1.7e-33   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/6      19    57 ..     1    38 []    18.8  0.00025
PF00400.22.ls   2/6      64   105 ..     1    38 []    24.1  0.00045
PF00400.22.fs   2/6      64   105 ..     1    38 []    22.1  2.9e-05
PF00400.22.ls   3/6     464   508 ..     1    38 []    31.7  2.3e-06
PF00400.22.fs   3/6     464   508 ..     1    38 []    29.7  2.1e-07
PF00400.22.ls   5/6     560   598 ..     1    38 []    27.3    5e-05
PF00400.22.fs   5/6     560   598 ..     1    38 []    25.3  3.6e-06
PF00400.22.fs   6/6    1394  1421 ..     1    27 [.    19.9  0.00012

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 6, from 19 to 57: score 18.8, E = 0.00025
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++   ++ t+ +++v    d g ++++g++Dg i++Wd   
    KIAA0541    19    PIVLwGRkAPTHCISAVLLTDD-GATIVTGCHDGQICLWD    57   

PF00400.22.ls: domain 2 of 6, from 64 to 105: score 24.1, E = 0.00045
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                       ++   l gHt+++tc++ +  +++ ++++s+S+ g  ++Wd   
    KIAA0541    64    INPRaLLfGHTASITCLSKACAssDKQYIVSASESGEMCLWD    105  

PF00400.22.fs: domain 2 of 6, from 64 to 105: score 22.1, E = 2.9e-05
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                       ++   l gHt+++tc++ +  +++ ++++s+S+ g  ++Wd   
    KIAA0541    64    INPRaLLfGHTASITCLSKACAssDKQYIVSASESGEMCLWD    105  

PF00400.22.ls: domain 3 of 6, from 464 to 508: score 31.7, E = 2.3e-06
                   *->geck.vl.gHtstVtcvafspd.....sgpllasgSrDgtikiWd<-
                      + + ++l+gH + Vtc+ + +  ++  ++++l+sg+ D ++ iWd  
    KIAA0541   464    WPPHrTLrGHRNKVTCLLYPHQvsaryDQRYLISGGVDFSVIIWD   508  

                   *
                    
    KIAA0541     -   -    

PF00400.22.fs: domain 3 of 6, from 464 to 508: score 29.7, E = 2.1e-07
                   *->geck.vl.gHtstVtcvafspd.....sgpllasgSrDgtikiWd<-
                      + + ++l+gH + Vtc+ + +  ++  ++++l+sg+ D ++ iWd  
    KIAA0541   464    WPPHrTLrGHRNKVTCLLYPHQvsaryDQRYLISGGVDFSVIIWD   508  

                   *
                    
    KIAA0541     -   -    

PF00400.22.ls: domain 5 of 6, from 560 to 598: score 27.3, E = 5e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++c+   + H  ++  +++ p+   +l+ g++Dg++++W    
    KIAA0541   560    KKCImLAsRHLFPIQVIKWRPS-DDYLVVGCSDGSVYVWQ    598  

PF00400.22.fs: domain 5 of 6, from 560 to 598: score 25.3, E = 3.6e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++c+   + H  ++  +++ p+   +l+ g++Dg++++W    
    KIAA0541   560    KKCImLAsRHLFPIQVIKWRPS-DDYLVVGCSDGSVYVWQ    598  

PF00400.22.fs: domain 6 of 6, from 1394 to 1421: score 19.9, E = 0.00012
                   *->geck.vl.gHtstVtcvafspdsgpllas<-*
                          ++++gH++++t+vaf+pd g++la+   
    KIAA0541  1394    TGKCqTIhGHKGPITAVAFAPD-GRYLAT    1421 

//