hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05553978/chunk_1/iprscan-20080502-05553978.nocrc
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Query sequence: KIAA0540
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  74.8    1.1e-17   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/3    1730  1775 ..     1    46 []     5.3       70
SM00320    2/3    1778  1817 ..     1    46 []    34.2  1.7e-05
SM00320    3/3    1829  1868 ..     1    46 []    35.2  8.7e-06

Alignments of top-scoring domains:
SM00320: domain 1 of 3, from 1730 to 1775: score 5.3, E = 70
                   *->t.kllrtlk.......gHtgespVtsvafspdggssdspnllasgs.
                      ++k  r l+++  +++g +g     ++a+ pdg      +ll+sg++
    KIAA0540  1730    ShKTQRLLSgpwvpgsGVSG----QALAVAPDG------KLLFSGGh 1766 

                   .DgtirlWd<-*
                   +Dg++r+     
    KIAA0540  1767 wDGSLRVTA    1775 

SM00320: domain 2 of 3, from 1778 to 1817: score 34.2, E = 1.7e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +kll+ l++H +   Vt++a +  g       +l+sgs+D t+ +W
    KIAA0540  1778    RgKLLSQLSCHLD--VVTCLALDTCG------IYLISGSrDTTCMVW 1816 

                   d<-*
                       
    KIAA0540  1817 R    1817 

SM00320: domain 3 of 3, from 1829 to 1868: score 35.2, E = 8.7e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k++++l gH +  +V++va+s         ++ +sgs+Dgt+ + 
    KIAA0540  1829    ApKPVQVLYGHGA--AVSCVAISTEL------DMAVSGSeDGTVIIH 1867 

                   d<-*
                       
    KIAA0540  1868 T    1868 

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