# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj15856.fasta.huge -Q ../query/KIAA0528.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0528, 1003 aa
 vs ./tmplib.23663 library

1986502 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.7173+/-0.00574; mu= 13.0926+/- 0.391
 mean_var=120.8180+/-28.800, 0's: 0 Z-trim: 8  B-trim: 7 in 1/39
 Lambda= 0.116683

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0538  ( 816 res)   hg03944(revised)            ( 816)  187 43.3 0.00015
KIAA0559  ( 1212 res)   hh01510                    (1212)  155 38.1  0.0084


>>KIAA0538  ( 816 res)   hg03944(revised)                 (816 aa)
 initn: 144 init1:  79 opt: 187  Z-score: 173.3  bits: 43.3 E(): 0.00015
Smith-Waterman score: 190;  22.247% identity (50.562% similar) in 445 aa overlap (2-409:138-552)

                                                10        20       
KIAA05                              TETMPG----KLKVKIVAGRHLPVMDRASDL
                                     :. ::    .:. ... .: :   :: .  
KIAA05 ASHPKGFSGWAHLTEVDPDEEVQGEIHLRLEVWPGARACRLRCSVLEARDLAPKDR-NGT
       110       120       130       140       150       160       

        30        40        50        60        70        80       
KIAA05 TDAFVEVKFGNTTFKTDVYLKSLNPQWNSEWFKFEVDDEDLQDEPLQITVLDHDTYSAND
       .: ::.:.. . : .:..  ::  :.:: : :.::...  .  : : . . : :  : ::
KIAA05 SDPFVRVRYKGRTRETSIVKKSCYPRWN-ETFEFELQEGAM--EALCVEAWDWDLVSRND
        170       180       190        200         210       220   

        90       100       110       120       130       140       
KIAA05 AIGKVYIDIDPLLYSEAATVISGWFPIYDTIHGIRGEINVVVKVDLFNDLNRFRQSSCGV
        .::: ::.. :   .      ::: .       :            .: . . . .  :
KIAA05 FLGKVVIDVQRLRVVQQE---EGWFRLQPDQSKSRR-----------HDEGNLGSLQLEV
           230       240          250                  260         

       150       160       170       180       190       200       
KIAA05 KFFCTTSIPKCYRAVIIHGFVEELVVNEDPEYQWIDRIRTPRASNEARQRLISLMSGELQ
       ..   : .:. :   ..: . .:. .. .   : :  :.   .:.: :: . . .     
KIAA05 RLRDETVLPSSYYQPLVHLLCHEVKLGMQGPGQLIPLIEET-TSTECRQDVATNL-----
     270       280       290       300       310        320        

       210       220       230           240        250         260
KIAA05 RKIGLKVLEMRGNAVVGYLQCFDLE----GESGLVVRAIGTAC-TLDKLSSPAA--FLPA
           ::..  .: :       :.::    .:.. . :. . :  ..... . :.  .: .
KIAA05 ----LKLFLGQGLAKDFLDLLFQLELSRTSETNTLFRSNSLASKSMESFLKVAGMQYLHG
               330       340       350       360       370         

                270         280       290       300       310      
KIAA05 CNSP--SKEMKEIPFNE-DPNP-NTHSSGPSTPLKNQTYSFSPSKSYSRQSSSSDTDLSL
         .:  .: ..:  . : ::.  .... : :   . :: .    .: .   .   . :: 
KIAA05 VLGPIINKVFEEKKYVELDPSKVEVKDVGCSGLHRPQTEAEVLEQSAQTLRAHLGALLSA
     380       390       400       410       420       430         

        320       330       340         350             360        
KIAA05 TPKTGMGSGSAGKEGGPFKALLRQQTQS--ALEQREFPFFTLTAF------PPGF----L
         ..  .  .. .  . :. :.:.  .   . .... ::...:.:       :..    :
KIAA05 LSRSVRACPAVVR--ATFRQLFRRVRERFPGAQHENVPFIAVTSFLCLRFFSPAIMSPKL
     440       450         460       470       480       490       

              370       380           390         400       410    
KIAA05 VHV----GGVVSARSVKLLDR----IHNPDEPETR--DAWWAEIRQEIKSHAKALGCHAV
        :.    . . ..:.. :: .    . : : : .:  .::   ..  ... .  :     
KIAA05 FHLRERHADARTSRTLLLLAKAVQNVGNMDTPASRAKEAWMEPLQPTVRQGVAQLKDFIT
       500       510       520       530       540       550       

          420       430       440       450       460       470    
KIAA05 VGYSESTSICEEVCILSASGTAAVLNPRFLQDGTVEGCLEQRLEENLPTRCGFCHIPYDE
                                                                   
KIAA05 KLVDIEEKDELDLQRTLSLQAPPVKEGPLFIHRTKGKGPLMSSSFKKLYFSLTTEALSFA
       560       570       580       590       600       610       

>>KIAA0559  ( 1212 res)   hh01510                         (1212 aa)
 initn: 200 init1: 146 opt: 155  Z-score: 142.2  bits: 38.1 E(): 0.0084
Smith-Waterman score: 159;  27.692% identity (57.692% similar) in 130 aa overlap (6-121:984-1109)

                                        10        20        30     
KIAA05                          TETMPGKLKVKIVAGRHLPVMDRASDLTDAFVEVK
                                     :.: ..:. .:.:   :  .  .: ::.: 
KIAA05 KHGSSKPTDGTKVVSHPITGEIQLQINYDLGNLIIHILQARNLVPRDN-NGYSDPFVKVY
           960       970       980       990      1000       1010  

                      40          50        60        70        80 
KIAA05 F------------GNTTFK--TDVYLKSLNPQWNSEWFKFEVDDEDLQDEPLQITVLDHD
       .            ... .:  :    :::::.::.  .   .. :.:. . :..:: :.:
KIAA05 LLPGRGQVMVVQNASAEYKRRTKHVQKSLNPEWNQTVIYKSISMEQLKKKTLEVTVWDYD
           1020      1030      1040      1050      1060      1070  

              90       100       110       120       130       140 
KIAA05 TYSANDAIGKVYIDIDPLLYSEAATVISGWFPIYDTIHGIRGEINVVVKVDLFNDLNRFR
        .:.:: .:.: ::..   . . .     :.:. .  ..:                    
KIAA05 RFSSNDFLGEVLIDLSSTSHLDNTP---RWYPLKEQTESIDHGKSHSSQSSQQSPKPSVI
           1080      1090         1100      1110      1120         

             150       160       170       180       190       200 
KIAA05 QSSCGVKFFCTTSIPKCYRAVIIHGFVEELVVNEDPEYQWIDRIRTPRASNEARQRLISL
                                                                   
KIAA05 KSRSHGIFPDPSKDMQVPTIEKSHSSPGSSKSSSEGHLRSHGPSRSQSKTSVTQTHLEDA
    1130      1140      1150      1160      1170      1180         




1003 residues in 1 query   sequences
1986502 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:05:43 2008 done: Thu Dec 18 15:05:43 2008
 Total Scan time:  0.670 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]