hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05235955/chunk_1/iprscan-20080502-05235955.nocrc
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Query sequence: KIAA0522
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00222                                                 309.2    2.8e-88   1
SM00233                                                  25.3     0.0083   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00222     1/1     817  1008 ..     1   226 []   309.2  2.8e-88
SM00233     1/1    1039  1150 ..     1    82 []    25.3   0.0083

Alignments of top-scoring domains:
SM00222: domain 1 of 1, from 817 to 1008: score 309.2, E = 2.8e-88
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                      ++ +++++ +g ++fn+kP+kGiq+L+e+gfl     d+p  vA+f+
    KIAA0522   817    DVVQRRHYRIGLNLFNKKPEKGIQYLIERGFLS----DTPVGVAHFI 859  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                              e++gl++++iG++Lg+++++fnr+vL++ vd++dFs +d
    KIAA0522   860 L----------ERKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSMD 899  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   ld ALR+f  ++r++GEaQk++Rl+eaFs+rYc cNp   ++++      
    KIAA0522   900 LDDALRKFQSHIRVQGEAQKVERLIEAFSQRYCVCNPALVRQFR------ 943  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       n+D++++La+++I+LNTD+++p vk ++      KM++ dFikNlr
    KIAA0522   944 ----NPDTIFILAFAIILLNTDMYSPSVKAER------KMKLDDFIKNLR 983  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g++    +ged+pr++L ++Y++I+ +e+   
    KIAA0522   984 GVD----NGEDIPRDLLVGIYQRIQGREL    1008 

SM00233: domain 1 of 1, from 1039 to 1150: score 25.3, E = 0.0083
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk........
                      ++++ +L+   +++++++ + ++r ++Lfn+ L+ +k  ++++   +
    KIAA0522  1039    LVCCCQLYEVPdpnrpqRlGLHQREVFLFNDLLVVTKIFqkkkilvt 1085 

                   .kpkgsipLsgcsvre.p......cFeivt.dr......tlllqAeseee
                    + + s+pL ++  +   ++    ++++ +   +++++  +++ A+s ++
    KIAA0522  1086 ySFRQSFPLVEMHMQLfQnsyyqfGIKLLSaVPggerkvLIIFNAPSLQD 1135 

                   reeWvealqsaiaka<-*
                   r +  + l++ ia+    
    KIAA0522  1136 RLRFTSDLRESIAEV    1150 

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