hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05235955/chunk_1/iprscan-20080502-05235955.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0522 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01369.11.ls Sec7 domain 201.2 2.3e-57 1 PF01369.11.fs Sec7 domain 200.7 3.1e-57 1 PF00612.17.ls IQ calmodulin-binding motif 17.0 0.063 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00612.17.ls 1/1 415 435 .. 1 21 [] 17.0 0.063 PF01369.11.ls 1/1 817 1008 .. 1 221 [] 201.2 2.3e-57 PF01369.11.fs 1/1 831 1008 .. 15 221 .] 200.7 3.1e-57 Alignments of top-scoring domains: PF00612.17.ls: domain 1 of 1, from 415 to 435: score 17.0, E = 0.063 *->rraaikIQaawRGylaRkryk<-* rraa +IQ a+R y++ k+++ KIAA0522 415 RRAARTIQTAFRQYRMNKNFE 435 PF01369.11.ls: domain 1 of 1, from 817 to 1008: score 201.2, E = 2.3e-57 *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle +++ +g + FN kP kGi+ Li++g+l ++p +A f+l KIAA0522 817 DVVQRRHYRIGLNLFNKKPEKGIQYLIERGFLS--DTPVGVAHFIL- 860 eteGLdKkaiGefLGe.nddfniqvLneFvkNlFdFtglpLdeALRlfLk e +GL+ +iGefLG++ fn +vL+ v+ ++dF+ + Ld+ALR+f KIAA0522 861 ERKGLSRQMIGEFLGNrQKQFNRDVLDCVVD-EMDFSSMDLDDALRKFQS 909 sFRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDs +R GEaQk +R++eaFS+rY+ c Np ++ + D+ KIAA0522 910 HIRVQGEAQKVERLIEAFSQRYCVC--NP-ALVRQ---------FRNPDT 947 ayvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEEL ++L++++I+LNTD +p VK kM l+dFi+N+r KIAA0522 948 IFILAFAIILLNTDMY-SPSVKAE-RKMKLDDFIKNLR------------ 983 gindGgDlprefLtelYesIkneei<-* g+++G+D+pr++L +Y I+ e+ KIAA0522 984 GVDNGEDIPRDLLVGIYQRIQGREL 1008 PF01369.11.fs: domain 1 of 1, from 831 to 1008: score 200.7, E = 3.1e-57 *->FNqkPkkGiedLiskglladdkdpqdiAkfLleeteGLdKkaiGefL FN kP kGi+ Li++g+l ++p +A f+l e +GL+ +iGefL KIAA0522 831 FNKKPEKGIQYLIERGFLS--DTPVGVAHFIL-ERKGLSRQMIGEFL 874 Ge.nddfniqvLneFvkNlFdFtglpLdeALRlfLksFRLPGEaQkIdRi G++ fn +vL+ v+ ++dF+ + Ld+ALR+f +R GEaQk +R+ KIAA0522 875 GNrQKQFNRDVLDCVVD-EMDFSSMDLDDALRKFQSHIRVQGEAQKVERL 923 leaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsayvLsYSlIMLNTD +eaFS+rY+ c Np ++ + D+ ++L++++I+LNTD KIAA0522 924 IEAFSQRYCVC--NP-ALVRQ---------FRNPDTIFILAFAIILLNTD 961 LHNNpqVKkKkikMTledFieNnrrdLREENEYEELgindGgDlprefLt +p VK kM l+dFi+N+r g+++G+D+pr++L KIAA0522 962 MY-SPSVKAE-RKMKLDDFIKNLR------------GVDNGEDIPRDLLV 997 elYesIkneei<-* +Y I+ e+ KIAA0522 998 GIYQRIQGREL 1008 //