hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05222115/chunk_1/iprscan-20080502-05222115.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0521 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00325 224.9 6.9e-63 1 SM00233 51.5 1.1e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00325 1/1 140 332 .. 1 211 [] 224.9 6.9e-63 SM00233 1/1 374 477 .. 1 82 [] 51.5 1.1e-10 Alignments of top-scoring domains: SM00325: domain 1 of 1, from 140 to 332: score 224.9, E = 6.9e-63 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl vl+EL+qTE ++Vr+Lki+++v+ ++L++e++ +s + + +l KIAA0521 140 VLYELMQTEVHHVRTLKIMLKVYSRALQEELQ------FSSKAIGRL 180 FgpNieeiyefHrrFLdeLeerveewllskdl.Ksernsviedsgerigd F+ + ++++e H++FL++L+er++e+l ++s+rn+vi+++g+++ + KIAA0521 181 FP-CADDLLETHSHFLARLKERRQESL----EeGSDRNYVIQKIGDLLVQ 225 vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies +F+++ ++e++++ Y+ +cs h++a++++k L+ ++n++Fq +k+i + KIAA0521 226 QFSGE-NGERMKEKYGVFCSGHNEAVSHYKLLL--QQNKKFQNLIKKIGN 272 kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk + r rl+ +++++++ QR+tkYp L+++++++t+++ ed+edL+ KIAA0521 273 FSIVR-----RLGVQECILLVTQRITKYPVLVERIIQNTEAGTEDYEDLT 317 kAleaikelasqvNe<-* +Al +ik+++sqv++ KIAA0521 318 QALNLIKDIISQVDA 332 SM00233: domain 1 of 1, from 374 to 477: score 51.5, E = 1.1e-10 *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk..........kpk + +eG L +k+++++ k+ ++L ++vLl+ ++k+++ + +++ KIAA0521 374 LHLEGMLCWKTtSgRLKDILAILLTDVLLLLQEKdqkyvfasvdSKP 420 gsipLsgcsvre.p.....cFeivt.dr...tlllqAeseeereeWveal ++i+L++++vre +++++ +F i+ + ++++ ++++++s+e+r+ W++++ KIAA0521 421 PVISLQKLIVREvAneekaMFLISAsLQgpeMYEIYTSSKEDRNAWMAHI 470 qsaiaka<-* q+a++++ KIAA0521 471 QRAVESC 477 //