hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05222115/chunk_1/iprscan-20080502-05222115.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0521 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00621.11.fs RhoGEF domain 73.2 2e-21 1 PF00621.11.ls RhoGEF domain 75.0 2.2e-19 1 PF00169.19.fs PH domain 42.9 1.3e-12 1 PF00169.19.ls PH domain 44.9 2.5e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00621.11.fs 1/1 140 332 .. 1 207 [] 73.2 2e-21 PF00621.11.ls 1/1 140 332 .. 1 207 [] 75.0 2.2e-19 PF00169.19.fs 1/1 374 475 .. 1 92 [] 42.9 1.3e-12 PF00169.19.ls 1/1 374 475 .. 1 92 [] 44.9 2.5e-10 Alignments of top-scoring domains: PF00621.11.fs: domain 1 of 1, from 140 to 332: score 73.2, E = 2e-21 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF vl+El++TE vr+L i ++vy + L+e+ +++ i +F KIAA0521 140 VLYELMQTEVHHVRTLKIMLKVYSRALQEEL-----QFSSKAIGRLF 181 sNiediyefhreFLkssLearisssnfedlDekkiepsaqr......lGd ++ d++e h++FL +L++r ++s e++ r+ +++Gd KIAA0521 182 PCADDLLETHSHFLA-RLKERRQES---------LEEGSDRnyviqkIGD 221 lFlelk.....aeflqvYgeYcsnkpyAqelleklrqaasnpqFaeflde l+ + +++++++++ + Yg +cs ++ A+ + + l+ ++n +F++++++ KIAA0521 222 LLVQQFsgengERMKEKYGVFCSGHNEAVSHYKLLL--QQNKKFQNLIKK 269 veassntgAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedss +++ s +l+ q +l qRi++Yp L+ ++ t + + + KIAA0521 270 IGNFSIVR------RLGVQECILLVTQRITKYPVLVERIIQNTEA--GTE 311 esedLkkaldalqdlaksiNe<-* ++edL +al +++d+++++++ KIAA0521 312 DYEDLTQALNLIKDIISQVDA 332 PF00621.11.ls: domain 1 of 1, from 140 to 332: score 75.0, E = 2.2e-19 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF vl+El++TE vr+L i ++vy + L+e+ +++ i +F KIAA0521 140 VLYELMQTEVHHVRTLKIMLKVYSRALQEEL-----QFSSKAIGRLF 181 sNiediyefhreFLkssLearisssnfedlDekkiepsaqr......lGd ++ d++e h++FL +L++r ++s e++ r+ +++Gd KIAA0521 182 PCADDLLETHSHFLA-RLKERRQES---------LEEGSDRnyviqkIGD 221 lFlelk.....aeflqvYgeYcsnkpyAqelleklrqaasnpqFaeflde l+ + +++++++++ + Yg +cs ++ A+ + + l+ ++n +F++++++ KIAA0521 222 LLVQQFsgengERMKEKYGVFCSGHNEAVSHYKLLL--QQNKKFQNLIKK 269 veassntgAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedss +++ s +l+ q +l qRi++Yp L+ ++ t + + + KIAA0521 270 IGNFSIVR------RLGVQECILLVTQRITKYPVLVERIIQNTEA--GTE 311 esedLkkaldalqdlaksiNe<-* ++edL +al +++d+++++++ KIAA0521 312 DYEDLTQALNLIKDIISQVDA 332 PF00169.19.fs: domain 1 of 1, from 374 to 475: score 42.9, E = 1.3e-12 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk........kkpk ++ eG L k+ ++ k+ ++L +dvLl+ ++k+++ + +++ KIAA0521 374 LHLEGMLCWKTTSGRLKDILAILLTDVLLLLQEKDqkyvfasvDSKP 420 gsipLsgiqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvka +i+L+++ v++v + +k +F i+ + +++e ++++++s+e+r+ W+++ KIAA0521 421 PVISLQKLIVREVANE-EKAMFLISAsLQgpEMYEIYTSSKEDRNAWMAH 469 iqsair<-* iq+a+ KIAA0521 470 IQRAVE 475 PF00169.19.ls: domain 1 of 1, from 374 to 475: score 44.9, E = 2.5e-10 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk........kkpk ++ eG L k+ ++ k+ ++L +dvLl+ ++k+++ + +++ KIAA0521 374 LHLEGMLCWKTTSGRLKDILAILLTDVLLLLQEKDqkyvfasvDSKP 420 gsipLsgiqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvka +i+L+++ v++v + +k +F i+ + +++e ++++++s+e+r+ W+++ KIAA0521 421 PVISLQKLIVREVANE-EKAMFLISAsLQgpEMYEIYTSSKEDRNAWMAH 469 iqsair<-* iq+a+ KIAA0521 470 IQRAVE 475 //