hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05171952/chunk_1/iprscan-20080502-05171952.nocrc
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Query sequence: KIAA0518
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.fs Helix-loop-helix DNA-binding domain             49.0    1.8e-12   1
PF00010.16.ls Helix-loop-helix DNA-binding domain             51.0    3.7e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1       9    60 ..     1    53 []    49.0  1.8e-12
PF00010.16.ls   1/1       9    60 ..     1    53 []    51.0  3.7e-12

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 9 to 60: score 49.0, E = 1.8e-12
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                       Rr+h+a ERrRR +++d fe+L+  l   ++s K+sK  iL++A +
    KIAA0518     9    YRRTHTANERRRRGEMRDLFEKLKITLGL-LHSSKVSKSLILTRAFS 54   

                   YIksLq<-*
                    I+ L+   
    KIAA0518    55 EIQGLT    60   

PF00010.16.ls: domain 1 of 1, from 9 to 60: score 51.0, E = 3.7e-12
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                       Rr+h+a ERrRR +++d fe+L+  l   ++s K+sK  iL++A +
    KIAA0518     9    YRRTHTANERRRRGEMRDLFEKLKITLGL-LHSSKVSKSLILTRAFS 54   

                   YIksLq<-*
                    I+ L+   
    KIAA0518    55 EIQGLT    60   

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