hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05153550/chunk_1/iprscan-20080502-05153550.nocrc
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Query sequence: KIAA0517
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00502                                                 143.4    2.4e-38   1
SM00557                                                 116.8    2.4e-30   1
SM00336                                                  63.3    3.1e-14   1
SM00184                                                  46.1    4.5e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00184    1/1      71   111 ..     1    23 []    46.1  4.5e-09
SM00336    1/1     161   202 ..     1    51 []    63.3  3.1e-14
SM00502    1/1     209   335 ..     1   132 []   143.4  2.4e-38
SM00557    1/1     372   472 ..     1   119 []   116.8  2.4e-30

Alignments of top-scoring domains:
SM00184: domain 1 of 1, from 71 to 111: score 46.1, E = 4.5e-09
                   *->CpICle....pvvlpCgH.FCr.Ci............CPlC<-*
                      C+ICle+ ++p+vlpC H+FC++C+++  + ++ + +CP+C   
    KIAA0517    71    CSICLEryknPKVLPCLHtFCErCLqnyipahsltlsCPVC    111  

SM00336: domain 1 of 1, from 161 to 202: score 63.3, E = 3.1e-14
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      ++++ C++H+ ++++ef+C +++++++Cr+C+e  eH      + H 
    KIAA0517   161    GKPLSCPNHD-GNVMEFYC-QSCETAMCRECTEG-EH------AEHP 198  

                   vvll<-*
                   +v+l   
    KIAA0517   199 TVPL    202  

SM00502: domain 1 of 1, from 209 to 335: score 143.4, E = 2.4e-38
                   *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea
                      ++++L+ +l++++k+ +e+ +al+ + +ii++++     ++++ +  
    KIAA0517   209    HKASLQVQLDAVNKRLPEIDSALQFISEIIHQLT-----NQKASIVD 250  

                   eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle
                   +i+ +fdeL+++Ln rk +Ll++Le  ++ k+k+L++Ql++l q+qe ++
    KIAA0517   251 DIHSTFDELQKTLNVRKSVLLMELEVNYGLKHKVLQSQLDTLLQGQESIK 300  

                   hainfaeeaLnsgdptelLlskkliierlqellkq<-*
                   ++ nf+ +aLn+g+ te+Ll+kk+++e+l+el++q   
    KIAA0517   301 SCSNFTAQALNHGTETEVLLVKKQMSEKLNELADQ    335  

SM00557: domain 1 of 1, from 372 to 472: score 116.8, E = 2.4e-30
                   *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd
                       as ++a+     G+GL ++    ++g+p    + t++tk+ +ge  
    KIAA0517   372    VASETVAT-----GEGLRQT----IIGQPM---SVTITTKDKDGE-- 404  

                   plt.GggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdy
                    +++G + l+++ + P+G     ++++ e+ dn++Gty   Yt++++Gd 
    KIAA0517   405 LCKtGNAYLTAELSTPDG-----SVADGEILDNKNGTYEFLYTVQKEGDF 449  

                   tvsVkfnGehipgSPFtvkVgpa<-*
                   t+s ++ ++hi+gSPF++kV  +   
    KIAA0517   450 TLSLRLYDQHIRGSPFKLKVIRS    472  

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