hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05153550/chunk_1/iprscan-20080502-05153550.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0517 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01436.11.ls NHL repeat 232.7 7.4e-67 6 PF01436.11.fs NHL repeat 221.0 2.5e-63 6 PF00643.14.ls B-box zinc finger 57.7 3.4e-14 1 PF00643.14.fs B-box zinc finger 55.9 1.1e-13 1 PF00097.15.fs Zinc finger, C3HC4 type (RING finger) 38.0 6.2e-13 1 PF00630.9.fs Filamin/ABP280 repeat 38.4 9.7e-11 1 PF00097.15.ls Zinc finger, C3HC4 type (RING finger) 39.8 8.5e-09 1 PF00630.9.ls Filamin/ABP280 repeat 39.3 1.2e-08 1 PF08450.2.fs SMP-30/Gluconolaconase/LRE-like region 20.2 1.7e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00097.15.fs 1/1 71 111 .. 1 50 [] 38.0 6.2e-13 PF00097.15.ls 1/1 71 111 .. 1 50 [] 39.8 8.5e-09 PF00643.14.ls 1/1 161 202 .. 1 50 [] 57.7 3.4e-14 PF00643.14.fs 1/1 161 202 .. 1 50 [] 55.9 1.1e-13 PF00630.9.ls 1/1 373 466 .. 1 97 [] 39.3 1.2e-08 PF00630.9.fs 1/1 373 466 .. 1 97 [] 38.4 9.7e-11 PF01436.11.ls 1/6 534 561 .. 1 29 [] 35.1 2.3e-07 PF01436.11.fs 1/6 534 561 .. 1 29 [] 33.1 5.2e-08 PF01436.11.ls 2/6 581 608 .. 1 29 [] 37.9 3.3e-08 PF01436.11.fs 2/6 581 608 .. 1 29 [] 35.9 8.9e-09 PF01436.11.fs 3/6 623 650 .. 1 29 [] 27.3 2.1e-06 PF01436.11.ls 3/6 623 650 .. 1 29 [] 29.3 1.3e-05 PF01436.11.fs 4/6 670 697 .. 1 29 [] 37.3 3.6e-09 PF01436.11.ls 4/6 670 697 .. 1 29 [] 39.3 1.2e-08 PF01436.11.fs 5/6 717 744 .. 1 29 [] 47.6 5.3e-12 PF01436.11.ls 5/6 717 744 .. 1 29 [] 49.6 9.8e-12 PF08450.2.fs 1/1 722 751 .. 211 241 .. 20.2 1.7e-05 PF01436.11.fs 6/6 761 788 .. 1 29 [] 39.6 8.7e-10 PF01436.11.ls 6/6 761 788 .. 1 29 [] 41.5 2.6e-09 Alignments of top-scoring domains: PF00097.15.fs: domain 1 of 1, from 71 to 111: score 38.0, E = 6.2e-13 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt C ICle +k+p+ +lpC+H+ fC+ Cl++++ +s + + KIAA0517 71 CSICLERYKNPK-----VLPCLHT-----FCERCLQNYIPAhSLTLS 107 CplC<-* Cp+C KIAA0517 108 CPVC 111 PF00097.15.ls: domain 1 of 1, from 71 to 111: score 39.8, E = 8.5e-09 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt C ICle +k+p+ +lpC+H+ fC+ Cl++++ +s + + KIAA0517 71 CSICLERYKNPK-----VLPCLHT-----FCERCLQNYIPAhSLTLS 107 CplC<-* Cp+C KIAA0517 108 CPVC 111 PF00643.14.ls: domain 1 of 1, from 161 to 202: score 57.7, E = 3.4e-14 *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv +k+ +Cp+H+ + +++++C+ +++++C++C++ eH + H + KIAA0517 161 GKPLSCPNHD-GNVMEFYCQSCETAMCRECTEG-EH------AEHPT 199 vpl<-* vpl KIAA0517 200 VPL 202 PF00643.14.fs: domain 1 of 1, from 161 to 202: score 55.9, E = 1.1e-13 *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv +k+ +Cp+H+ + +++++C+ +++++C++C++ eH + H + KIAA0517 161 GKPLSCPNHD-GNVMEFYCQSCETAMCRECTEG-EH------AEHPT 199 vpl<-* vpl KIAA0517 200 VPL 202 PF00630.9.ls: domain 1 of 1, from 373 to 466: score 39.3, E = 1.2e-08 *->DaskVkAyGPGLeptggkvgkPAeFtvdavdaggetlAaGggglsVk as A G GL g+P + t+ ++d++ge + G l+ KIAA0517 373 -ASETVATGEGLR--QTIIGQPMSVTITTKDKDGELCKTGNAYLTAE 416 VeGPsgapvevkvtDngDGTYtVsYtPtepGdYtvnVtygGehIPgSPFk + P+g + + ++ Dn++GTY Yt +++Gd t + + ++hI gSPFk KIAA0517 417 LSTPDGSVADGEILDNKNGTYEFLYTVQKEGDFTLSLRLYDQHIRGSPFK 466 <-* KIAA0517 - - PF00630.9.fs: domain 1 of 1, from 373 to 466: score 38.4, E = 9.7e-11 *->DaskVkAyGPGLeptggkvgkPAeFtvdavdaggetlAaGggglsVk as A G GL g+P + t+ ++d++ge + G l+ KIAA0517 373 -ASETVATGEGLR--QTIIGQPMSVTITTKDKDGELCKTGNAYLTAE 416 VeGPsgapvevkvtDngDGTYtVsYtPtepGdYtvnVtygGehIPgSPFk + P+g + + ++ Dn++GTY Yt +++Gd t + + ++hI gSPFk KIAA0517 417 LSTPDGSVADGEILDNKNGTYEFLYTVQKEGDFTLSLRLYDQHIRGSPFK 466 <-* KIAA0517 - - PF01436.11.ls: domain 1 of 6, from 534 to 561: score 35.1, E = 2.3e-07 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* + + +Gva + ++G +++aDs+n +vq+f KIAA0517 534 FTNLQGVAAS-TNGKILIADSNNQCVQIF 561 PF01436.11.fs: domain 1 of 6, from 534 to 561: score 33.1, E = 5.2e-08 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* + + +Gva + ++G +++aDs+n +vq+f KIAA0517 534 FTNLQGVAAS-TNGKILIADSNNQCVQIF 561 PF01436.11.ls: domain 2 of 6, from 581 to 608: score 37.9, E = 3.3e-08 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+rP+Gvav ++G++++aD++n v +f KIAA0517 581 LQRPTGVAVH-PSGDIIIADYDNKWVSIF 608 PF01436.11.fs: domain 2 of 6, from 581 to 608: score 35.9, E = 8.9e-09 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+rP+Gvav ++G++++aD++n v +f KIAA0517 581 LQRPTGVAVH-PSGDIIIADYDNKWVSIF 608 PF01436.11.fs: domain 3 of 6, from 623 to 650: score 27.3, E = 2.1e-06 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l P Gv vd ++G+++V+D+ +v++f KIAA0517 623 LMGPKGVSVD-RNGHIIVVDNKACCVFIF 650 PF01436.11.ls: domain 3 of 6, from 623 to 650: score 29.3, E = 1.3e-05 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l P Gv vd ++G+++V+D+ +v++f KIAA0517 623 LMGPKGVSVD-RNGHIIVVDNKACCVFIF 650 PF01436.11.fs: domain 4 of 6, from 670 to 697: score 37.3, E = 3.6e-09 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* + Ph av+ s+++++++D++nh v+vf KIAA0517 670 FAGPHFAAVN-SNNEIIITDFHNHSVKVF 697 PF01436.11.ls: domain 4 of 6, from 670 to 697: score 39.3, E = 1.2e-08 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* + Ph av+ s+++++++D++nh v+vf KIAA0517 670 FAGPHFAAVN-SNNEIIITDFHNHSVKVF 697 PF01436.11.fs: domain 5 of 6, from 717 to 744: score 47.6, E = 5.3e-12 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* +n P+Gvavd s+G+++VaD +n+r+qvf KIAA0517 717 FNAPTGVAVD-SNGNIIVADWGNSRIQVF 744 PF01436.11.ls: domain 5 of 6, from 717 to 744: score 49.6, E = 9.8e-12 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* +n P+Gvavd s+G+++VaD +n+r+qvf KIAA0517 717 FNAPTGVAVD-SNGNIIVADWGNSRIQVF 744 PF08450.2.fs: domain 1 of 1, from 722 to 751: score 20.2, E = 1.7e-05 *->GmaiDaeGnlWvAlwgggkVvrfdPdtGkll<-* G a+D++Gn+ vA wg++++++fd + G l KIAA0517 722 GVAVDSNGNIIVADWGNSRIQVFDGS-GSFL 751 PF01436.11.fs: domain 6 of 6, from 761 to 788: score 39.6, E = 8.7e-10 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+ P+G+a++ sdG+v+VaDs+nh+ +v+ KIAA0517 761 LYGPQGLALT-SDGHVVVADSGNHCFKVY 788 PF01436.11.ls: domain 6 of 6, from 761 to 788: score 41.5, E = 2.6e-09 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+ P+G+a++ sdG+v+VaDs+nh+ +v+ KIAA0517 761 LYGPQGLALT-SDGHVVVADSGNHCFKVY 788 //