hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04324552/chunk_1/iprscan-20080502-04324552.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0491 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03114.8.ls BAR domain 328.4 1.1e-95 1 PF03114.8.fs BAR domain 326.5 4.4e-95 1 PF00018.18.fs SH3 domain 44.0 3e-11 1 PF00018.18.ls SH3 domain 45.9 1.3e-10 1 PF07653.7.fs Variant SH3 domain 37.0 5.2e-10 1 PF07653.7.ls Variant SH3 domain 38.8 1.8e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03114.8.fs 1/1 37 280 .. 1 264 [] 326.5 4.4e-95 PF03114.8.ls 1/1 37 280 .. 1 264 [] 328.4 1.1e-95 PF00018.18.fs 1/1 334 390 .. 1 59 [] 44.0 3e-11 PF00018.18.ls 1/1 334 390 .. 1 59 [] 45.9 1.3e-10 PF07653.7.fs 1/1 335 390 .. 1 69 [] 37.0 5.2e-10 PF07653.7.ls 1/1 335 390 .. 1 69 [] 38.8 1.8e-08 Alignments of top-scoring domains: PF03114.8.fs: domain 1 of 1, from 37 to 280: score 326.5, E = 4.4e-95 *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv l+ +AG+f++Ra q+++eK+G aekT+ LD ++e+l ++++t+ ++ KIAA0491 37 LAADAGTFLSRAVQFTEEKLGQAEKTE-LDAHLENLLSKAECTKIWT 82 kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm +k++k+t+ lqpnp ar +++v+ekl+ r++++r+++p+ lL+++m KIAA0491 83 EKIMKQTEVLLQPNPNARIEEFVYEKLD--RKAPSRINNPE---LLGQYM 127 qeigeelgddsedPfGkaLekygeamkqlaqlleqldervkqnfldPltn +++g+e+g+++ +G+aL+k+ge++k+++ + ++l+++ + nfl+Pl+n KIAA0491 128 IDAGTEFGPGTA--YGNALIKCGETQKRIGTADRELIQTSALNFLTPLRN 175 llekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekklakA ++e+++k+i k++k l++KrLD+Da++trlkkak+ ++++++ KIAA0491 176 FIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETRNSS-------- 217 dqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaqldf e+Elr q +f++++e+++ +L++++++++++l ++l +fveaq+++ KIAA0491 218 ---EQELRITQSEFDRQAEITRLLLEGISSTHAHHL-RCLNDFVEAQMTY 263 hrqsaqlleqlqqqLdk<-* ++q++q++ +lq qL++ KIAA0491 264 YAQCYQYMLDLQKQLGS 280 PF03114.8.ls: domain 1 of 1, from 37 to 280: score 328.4, E = 1.1e-95 *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv l+ +AG+f++Ra q+++eK+G aekT+ LD ++e+l ++++t+ ++ KIAA0491 37 LAADAGTFLSRAVQFTEEKLGQAEKTE-LDAHLENLLSKAECTKIWT 82 kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm +k++k+t+ lqpnp ar +++v+ekl+ r++++r+++p+ lL+++m KIAA0491 83 EKIMKQTEVLLQPNPNARIEEFVYEKLD--RKAPSRINNPE---LLGQYM 127 qeigeelgddsedPfGkaLekygeamkqlaqlleqldervkqnfldPltn +++g+e+g+++ +G+aL+k+ge++k+++ + ++l+++ + nfl+Pl+n KIAA0491 128 IDAGTEFGPGTA--YGNALIKCGETQKRIGTADRELIQTSALNFLTPLRN 175 llekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekklakA ++e+++k+i k++k l++KrLD+Da++trlkkak+ ++++++ KIAA0491 176 FIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETRNSS-------- 217 dqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaqldf e+Elr q +f++++e+++ +L++++++++++l ++l +fveaq+++ KIAA0491 218 ---EQELRITQSEFDRQAEITRLLLEGISSTHAHHL-RCLNDFVEAQMTY 263 hrqsaqlleqlqqqLdk<-* ++q++q++ +lq qL++ KIAA0491 264 YAQCYQYMLDLQKQLGS 280 PF00018.18.fs: domain 1 of 1, from 334 to 390: score 44.0, E = 3e-11 *->kkvvALYDYearesdELsFkkGDvitvleksdd.pgWWkgrlkgtgG +k+++LYDY+a +s ELs+ +vitv + + +++W+ g++ + KIAA0491 334 RKARVLYDYDAANSTELSLLADEVITVFSVVGMdSDWLMGERG---N 377 keGliPsNYVepv<-* ++G +P +Y+e+ KIAA0491 378 QKGKVPITYLELL 390 PF00018.18.ls: domain 1 of 1, from 334 to 390: score 45.9, E = 1.3e-10 *->kkvvALYDYearesdELsFkkGDvitvleksdd.pgWWkgrlkgtgG +k+++LYDY+a +s ELs+ +vitv + + +++W+ g++ + KIAA0491 334 RKARVLYDYDAANSTELSLLADEVITVFSVVGMdSDWLMGERG---N 377 keGliPsNYVepv<-* ++G +P +Y+e+ KIAA0491 378 QKGKVPITYLELL 390 PF07653.7.fs: domain 1 of 1, from 335 to 390: score 37.0, E = 5.2e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidv..ggskdddgw ++r++ dy+a ++ +e Lsl +++v+ V+ g +d +w KIAA0491 335 KARVLYDYDA-ANSTE------LSLLADEVITVF-SvvG---MDSDW 370 wegeslggGrrrRGlvPssaveel<-* ge+ g+++ G vP +++e l KIAA0491 371 LMGER--GNQK--GKVPITYLELL 390 PF07653.7.ls: domain 1 of 1, from 335 to 390: score 38.8, E = 1.8e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidv..ggskdddgw ++r++ dy+a ++ +e Lsl +++v+ V+ g +d +w KIAA0491 335 KARVLYDYDA-ANSTE------LSLLADEVITVF-SvvG---MDSDW 370 wegeslggGrrrRGlvPssaveel<-* ge+ g+++ G vP +++e l KIAA0491 371 LMGER--GNQK--GKVPITYLELL 390 //