hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04075693/chunk_1/iprscan-20080502-04075693.nocrc
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Query sequence: KIAA0476
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00799                                                 250.5    1.4e-70   1
SM00800                                                 117.7    1.3e-30   1
SM00801                                                  97.9    1.2e-24   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00800     1/1     302   409 ..     1   114 []   117.7  1.3e-30
SM00799     1/1     443   627 ..     1   204 []   250.5  1.4e-70
SM00801     1/1     692   766 ..     1    84 []    97.9  1.2e-24

Alignments of top-scoring domains:
SM00800: domain 1 of 1, from 302 to 409: score 117.7, E = 1.3e-30
                   *->pgrLfdyfvvvgldkskglepdelsalyql.eapgrtGefqplgrsy
                      ++ + ++++  +++  +g++   ++++y+ + a+       + ++ y
    KIAA0476   302    GEGTPHTYCRLPRNLNPGMWGPAVYLCYKVgLAK-------ANTLVY 341  

                   kPeildryPekdfedfplpdsvpmFCFPeGidietwprstsspdpqfFsF
                   ++e+l ryPe+d e fplp+svp FC+P+G++ie+wp++t++p+p+f++F
    KIAA0476   342 EAELLGRYPEEDNEAFPLPESVPVFCLPMGATIECWPAQTKYPVPVFSTF 391  

                   VLTdedGsrrYGfCrrfy<-*
                   VLT+  G ++YG++++fy   
    KIAA0476   392 VLTGAAGDKVYGAALQFY    409  

SM00799: domain 1 of 1, from 443 to 627: score 250.5, E = 1.4e-70
                   *->yapkcisCilSrlpffelFrkfLnelyrllasdsssellleellisl
                      +++++i  +lSr+p f +Fr fL +lyr+ +  s+++ l+ e +is+
    KIAA0476   443    RSRRAI-AVLSRWPAFPAFRAFLTFLYRYSV--SGPHRLPLEAHISH 486  

                   llspvPlPppggslvlsslsSyvslgppgdlvvpielqrPddselplide
                   + ++vP+P+p++++ l      v+++ p d     +l++P++s+lpl++ 
    KIAA0476   487 FIHNVPFPSPQRPRIL------VQMS-PYDNL---LLCQPVSSPLPLSG- 525  

                   nfdlheLfecLgvenvlqLfaslLlErrIifvSsnlstLsavieallaLL
                     ++ +L++ Lg+e  ++L+ ++L+E++ +++S ++ +L++v+eal++++
    KIAA0476   526 -ASFLQLLQSLGPELAITLLLAVLTEHKLLVHSLRPDLLTSVCEALVSMI 574  

                   yPFvWQhvyIPiLPasLldvLsAPtPFiiGvhssffeevkeepdeeddvv
                   +P++WQ++yIP++P  L+dvLsAP+PFi+G+hss+f++++++ d    v+
    KIAA0476   575 FPLHWQCPYIPLCPLVLADVLSAPVPFIVGIHSSYFDLHDPPAD----VI 620  

                   vVDLDtg<-*
                   +VDLDt+   
    KIAA0476   621 CVDLDTN    627  

SM00801: domain 1 of 1, from 692 to 766: score 97.9, E = 1.2e-24
                   *->lndeireaaFlrffnsaqllggllYrnflrkhpitdaptwrkepgpv
                      l++e++  aFlrf+  a+ll+g  Yr flr  p t+ap ++  ++  
    KIAA0476   692    LEREVQ-GAFLRFM--ACLLKG--YRVFLR--PLTQAP-SEGARDVD 730  

                   isFdkesFlksrpsselrpFlkkfletQmFsqFIeer<-*
                    +F  ++Flksr++s+ ++ ++++l+tQmFsqFIee+   
    KIAA0476   731 NLFFLQGFLKSRERSS-HKLYSQLLHTQMFSQFIEEC    766  

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