hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04075693/chunk_1/iprscan-20080502-04075693.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0476 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02141.11.ls DENN (AEX-3) domain 294.2 2.2e-85 1 PF02141.11.fs DENN (AEX-3) domain 292.5 7.5e-85 1 PF03455.9.ls dDENN domain 122.3 1.3e-33 1 PF03455.9.fs dDENN domain 120.3 3.5e-33 1 PF03456.8.fs uDENN domain 40.8 5.5e-11 2 PF03456.8.ls uDENN domain 28.3 4.7e-06 1 PF01535.11.fs PPR repeat 22.2 1.4e-05 1 PF01535.11.ls PPR repeat 24.2 0.00043 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03456.8.ls 1/1 321 409 .. 1 108 [] 28.3 4.7e-06 PF03456.8.fs 2/2 340 409 .. 30 108 .] 34.2 4.1e-09 PF02141.11.ls 1/1 443 627 .. 1 231 [] 294.2 2.2e-85 PF02141.11.fs 1/1 443 627 .. 1 231 [] 292.5 7.5e-85 PF03455.9.fs 1/1 692 766 .. 1 81 [] 120.3 3.5e-33 PF03455.9.ls 1/1 692 766 .. 1 81 [] 122.3 1.3e-33 PF01535.11.ls 1/1 944 978 .. 1 35 [] 24.2 0.00043 PF01535.11.fs 1/1 944 978 .. 1 35 [] 22.2 1.4e-05 Alignments of top-scoring domains: PF03456.8.ls: domain 1 of 1, from 321 to 409: score 28.3, E = 4.7e-06 *->carLfDyfVvVgldkkpsglgPDelagdneylPellrqFPSKllahy ++ + + Vgl k + +y++ell ++P KIAA0476 321 WGPAVYLCYKVGLAKAN----------TLVYEAELLGRYP------- 350 kedhedepfdlksipkFCfPegld...svsvrevnalrdpqfFsFvLTde +ed e++p+ + s+p+FC+P g + + + ++++ p f +FvLT+ KIAA0476 351 EEDNEAFPL-PESVPVFCLPMGATiecWPAQTKY---PVPVFSTFVLTGA 396 DskRtryGfCltfy<-* +++ yG l fy KIAA0476 397 AGDK-VYGAALQFY 409 PF03456.8.fs: domain 2 of 2, from 340 to 409: score 34.2, E = 4.1e-09 *->eylPellrqFPSKllahykedhedepfdlksipkFCfPegld...sv +y++ell ++P +ed e++p+ + s+p+FC+P g + + + KIAA0476 340 VYEAELLGRYP-------EEDNEAFPL-PESVPVFCLPMGATiecWP 378 svrevnalrdpqfFsFvLTdeDskRtryGfCltfy<-* ++++ p f +FvLT+ +++ yG l fy KIAA0476 379 AQTKY---PVPVFSTFVLTGAAGDK-VYGAALQFY 409 PF02141.11.ls: domain 1 of 1, from 443 to 627: score 294.2, E = 2.2e-85 *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk r++++i ++Sr+p f+aFr++L++l+r+++s +++ lp KIAA0476 443 RSRRAIAVLSRWPAFPAFRAFLTFLYRYSVSGPHR-LP--------- 479 srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg lE++i++++++vp+P+p+++ r++v+++ KIAA0476 480 ---------------------LEAHISHFIHNVPFPSPQRP-RILVQMS- 506 agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl p++++l+++p+ +plpl+++++++l+++LG+e +++L++a+L+ KIAA0476 507 -------PYDNLLLCQPVSSPLPLSGASFLQLLQSLGPELAITLLLAVLT 549 ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc E+k L++S++++ L+s+c+Alv++++Pl+Wq+pyIP++P+ L+ dvL+ KIAA0476 550 EHKLLVHSLRPDLLTSVCEALVSMIFPLHWQCPYIPLCPLVLA---DVLS 596 APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-* AP+PF++G+hss+f+l+++++ dv++VDLDtn KIAA0476 597 APVPFIVGIHSSYFDLHDPPA---DVICVDLDTN 627 PF02141.11.fs: domain 1 of 1, from 443 to 627: score 292.5, E = 7.5e-85 *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk r++++i ++Sr+p f+aFr++L++l+r+++s +++ lp KIAA0476 443 RSRRAIAVLSRWPAFPAFRAFLTFLYRYSVSGPHR-LP--------- 479 srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg lE++i++++++vp+P+p+++ r++v+++ KIAA0476 480 ---------------------LEAHISHFIHNVPFPSPQRP-RILVQMS- 506 agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl p++++l+++p+ +plpl+++++++l+++LG+e +++L++a+L+ KIAA0476 507 -------PYDNLLLCQPVSSPLPLSGASFLQLLQSLGPELAITLLLAVLT 549 ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc E+k L++S++++ L+s+c+Alv++++Pl+Wq+pyIP++P+ L+ dvL+ KIAA0476 550 EHKLLVHSLRPDLLTSVCEALVSMIFPLHWQCPYIPLCPLVLA---DVLS 596 APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-* AP+PF++G+hss+f+l+++++ dv++VDLDtn KIAA0476 597 APVPFIVGIHSSYFDLHDPPA---DVICVDLDTN 627 PF03455.9.fs: domain 1 of 1, from 692 to 766: score 120.3, E = 3.5e-33 *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke l+ +v++aFLrf+ a+ll+gYr+fLr++++ap+ egard ++F ++ KIAA0476 692 LEREVQGAFLRFM-ACLLKGYRVFLRPLTQAPS-EGARDVDNLFFLQ 736 aFLksrprssqraFlsrlletQAVemFaeFIeeR<-* +FLksr+rss+ + +s+ll+tQ mF++FIee+ KIAA0476 737 GFLKSRERSSH-KLYSQLLHTQ---MFSQFIEEC 766 PF03455.9.ls: domain 1 of 1, from 692 to 766: score 122.3, E = 1.3e-33 *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke l+ +v++aFLrf+ a+ll+gYr+fLr++++ap+ egard ++F ++ KIAA0476 692 LEREVQGAFLRFM-ACLLKGYRVFLRPLTQAPS-EGARDVDNLFFLQ 736 aFLksrprssqraFlsrlletQAVemFaeFIeeR<-* +FLksr+rss+ + +s+ll+tQ mF++FIee+ KIAA0476 737 GFLKSRERSSH-KLYSQLLHTQ---MFSQFIEEC 766 PF01535.11.ls: domain 1 of 1, from 944 to 978: score 24.2, E = 0.00043 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* v+Y +l++ +++ G++ ++++ eM++ Gi+P++ KIAA0476 944 VCYRVLMQLCSHYGQPVLSVRVMLEMRQAGIVPNT 978 PF01535.11.fs: domain 1 of 1, from 944 to 978: score 22.2, E = 1.4e-05 *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-* v+Y +l++ +++ G++ ++++ eM++ Gi+P++ KIAA0476 944 VCYRVLMQLCSHYGQPVLSVRVMLEMRQAGIVPNT 978 //