# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh00220.fasta.huge -Q ../query/KIAA0473.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0473, 937 aa vs ./tmplib.23147 library 1986568 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.6132+/-0.00972; mu= -3.2800+/- 0.656 mean_var=430.3334+/-108.121, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.061826 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1075 ( 1505 res) hj06716s1 (1505) 413 52.1 5.9e-07 >>KIAA1075 ( 1505 res) hj06716s1 (1505 aa) initn: 351 init1: 261 opt: 413 Z-score: 216.8 bits: 52.1 E(): 5.9e-07 Smith-Waterman score: 461; 25.719% identity (51.259% similar) in 556 aa overlap (87-616:226-710) 60 70 80 90 100 110 KIAA04 LFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDNVDIGFRNQVD :::.:::: ::.. .:: . :... KIAA10 LGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLR 200 210 220 230 240 250 120 130 140 150 160 170 KIAA04 DIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWL .. :.:.: :.: ..::: : . .... .:.. .:: .:: : .: ..:. : .:: KIAA10 ELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCSICKAMETWL 260 270 280 290 300 310 180 190 200 210 220 230 KIAA04 LQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAIRLLYAKR-----PGIGLSPS .:..: :..: ... ...:.:.. . .. . :. : .. . :.:: KIAA10 SADPQHVVVLYCKGNKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPS 320 330 340 350 360 370 240 250 260 270 280 290 KIAA04 HRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPIPFFNKQRNGCRPYCDVLIGETKIYST .:::..:. ::. . : . .:: .. . . .: :. .: .:. . . .:. KIAA10 QRRYISYFSGLLSGS-IRMNSSPLFLHYVLIPMLPAFEPG-TGFQPFLKIYQSMQLVYT- 380 390 400 410 420 430 300 310 320 330 340 350 KIAA04 CTDFERMKEYRVQDGKIFIPLNITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHT . .. :. : . . ..:::.:. :: :.: . : .:..:::: KIAA10 -SGVYHIAGPGPQQLCISLEPALLLKGDVMVTCYHK----GGRGTDR---TLVFRVQFHT 440 450 460 470 480 360 370 380 390 400 410 KIAA04 GFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKVIDLTPPWEHYCTKDVN : : : : .:: . :..: ::.. ::. :.. .: . : . KIAA10 CTI--HGPQLTFPKDQLDEAWTDERFP--FQAS--VEF-----VFSSSPEKIKGSTPRND 490 500 510 520 530 420 430 440 450 460 470 KIAA04 PSILFSSHQEHQDTLALGGQAPIDIPPDNPRHYGQSGFFASLCWQDQKSEKSFCEEDHAA ::. .: .: .. :. : ..: KIAA10 PSV------------------SVDYNTTEP----------AVRWD---SYENF------- 540 550 480 490 500 510 520 KIAA04 LVNQESEQSDDELLTLSSPHGNANGDKPHGVKKPSKKQQEPAAP---PPPEDVDLLGLEG ::. :.: : .:. .: .:. :..: . : : :: ::: . .. .. KIAA10 --NQHHEDSVDG--SLTHTRGPLDGSPYAQVQRPPR--QTPPAPSPEPPPPPMLSVSSDS 560 570 580 590 600 530 540 550 560 570 KIAA04 SAMSNSFSPPAA------PPTNSEL--LSDLFGGGG-AAGPTQAGQSG--VEDVFHPS-- . :. . ::: ::: .: :. :.:: : :.: ::. ..: .:. KIAA10 GHSSTLTTEPAAESPGRPPPTAAERQELDRLLGGCGVASGGRGAGRETAILDDEEQPTVG 610 620 630 640 650 660 580 590 600 610 620 630 KIAA04 -GPASTQSTPRRSATSTSASPTLRVGEGATFDPFGAPS----KPSGQDLLGSFLNTSSAS :: .: . : : : : .: :.:. .: : KIAA10 GGPHLGVYPGHRPGLSRHCS--CRQG---YREPCGVPNGGYYRPEGTLERRRLAYGGYEG 670 680 690 700 710 720 640 650 660 670 680 690 KIAA04 SDPFLQPTRSPSPTVHASSTPAVNIQPDVSGGWDWHAKPGGFGMGSKSAATSPTGSSHGT KIAA10 SPQGYAEASMEKRRLCRSLSEGLYPYPPEMGKPATGDFGYRAPGYREVVILEDPGLPALY 730 740 750 760 770 780 937 residues in 1 query sequences 1986568 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:23:13 2008 done: Thu Dec 18 15:23:13 2008 Total Scan time: 0.650 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]