hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03320123/chunk_1/iprscan-20080502-03320123.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0456 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 219.0 2.5e-64 1 PF00620.17.ls RhoGAP domain 221.0 2.5e-63 1 PF00611.13.fs Fes/CIP4 homology domain 117.2 7e-34 1 PF00611.13.ls Fes/CIP4 homology domain 119.1 1.2e-32 1 PF00018.18.fs SH3 domain 50.9 3.8e-13 1 PF00018.18.ls SH3 domain 52.8 1e-12 1 PF07653.7.fs Variant SH3 domain 39.0 1.3e-10 1 PF07653.7.ls Variant SH3 domain 40.8 4.3e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00611.13.fs 1/1 46 144 .. 1 107 [] 117.2 7e-34 PF00611.13.ls 1/1 46 144 .. 1 107 [] 119.1 1.2e-32 PF00620.17.ls 1/1 529 681 .. 1 155 [] 221.0 2.5e-63 PF00620.17.fs 1/1 529 681 .. 1 155 [] 219.0 2.5e-64 PF00018.18.fs 1/1 755 809 .. 1 59 [] 50.9 3.8e-13 PF00018.18.ls 1/1 755 809 .. 1 59 [] 52.8 1e-12 PF07653.7.ls 1/1 756 809 .. 1 69 [] 40.8 4.3e-09 PF07653.7.fs 1/1 756 809 .. 1 69 [] 39.0 1.3e-10 Alignments of top-scoring domains: PF00611.13.fs: domain 1 of 1, from 46 to 144: score 117.2, E = 7e-34 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk ++++++l ++++k+L+++++ +++ll+dl++F+r++a+iE++Y+++ KIAA0456 46 KEIRAQL--TEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRN 90 LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls L+kl+++++ k+R ++kd+ ++k++ +ls++ ++wn ll++++++s KIAA0456 91 LEKLAERFLAKTR-----STKDQQFKKDQNVLSPV-NCWNLLLNQVKRES 134 klHsqlseqL<-* ++H +ls+++ KIAA0456 135 RDHTTLSDIY 144 PF00611.13.ls: domain 1 of 1, from 46 to 144: score 119.1, E = 1.2e-32 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk ++++++l ++++k+L+++++ +++ll+dl++F+r++a+iE++Y+++ KIAA0456 46 KEIRAQL--TEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRN 90 LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls L+kl+++++ k+R ++kd+ ++k++ +ls++ ++wn ll++++++s KIAA0456 91 LEKLAERFLAKTR-----STKDQQFKKDQNVLSPV-NCWNLLLNQVKRES 134 klHsqlseqL<-* ++H +ls+++ KIAA0456 135 RDHTTLSDIY 144 PF00620.17.ls: domain 1 of 1, from 529 to 681: score 221.0, E = 2.5e-63 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Pl+ve+Ci+f+ ++GL+ EGI+RvsGs+ +++ +++af+rged+ KIAA0456 529 PLVVESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAG 575 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea d +++d ++A++LKl++R L +PL++++ ++++++ ++ +++ +er + KIAA0456 576 DQNDHDMDSIAGVLKLYFRGLEHPLFPKDIFHDLMA-CVTMDNLQERALH 624 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +r++l LP+ +ryL+a+Ln+ +q+se+N+M+++NLAi+FgP+L+ KIAA0456 625 IRKVLLVLPKTTLIIMRYLFAFLNHLSQFSEENMMDPYNLAICFGPSLMS 674 ppdgdsad<-* p+g +++ KIAA0456 675 VPEG-HDQ 681 PF00620.17.fs: domain 1 of 1, from 529 to 681: score 219.0, E = 2.5e-64 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Pl+ve+Ci+f+ ++GL+ EGI+RvsGs+ +++ +++af+rged+ KIAA0456 529 PLVVESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAG 575 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea d +++d ++A++LKl++R L +PL++++ ++++++ ++ +++ +er + KIAA0456 576 DQNDHDMDSIAGVLKLYFRGLEHPLFPKDIFHDLMA-CVTMDNLQERALH 624 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +r++l LP+ +ryL+a+Ln+ +q+se+N+M+++NLAi+FgP+L+ KIAA0456 625 IRKVLLVLPKTTLIIMRYLFAFLNHLSQFSEENMMDPYNLAICFGPSLMS 674 ppdgdsad<-* p+g +++ KIAA0456 675 VPEG-HDQ 681 PF00018.18.fs: domain 1 of 1, from 755 to 809: score 50.9, E = 3.8e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A++DY++r++ ELsFkkG + + ++ d +WW+gr + G KIAA0456 755 IEAIAKFDYVGRTARELSFKKGASLLLYQRASD-DWWEGRHN---GI 797 eGliPsNYVepv<-* GliP++Y+ KIAA0456 798 DGLIPHQYIVVQ 809 PF00018.18.ls: domain 1 of 1, from 755 to 809: score 52.8, E = 1e-12 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A++DY++r++ ELsFkkG + + ++ d +WW+gr + G KIAA0456 755 IEAIAKFDYVGRTARELSFKKGASLLLYQRASD-DWWEGRHN---GI 797 eGliPsNYVepv<-* GliP++Y+ KIAA0456 798 DGLIPHQYIVVQ 809 PF07653.7.ls: domain 1 of 1, from 756 to 809: score 40.8, E = 4.3e-09 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a +dyv+ + ++e Ls+kkG + ++ + +d+wwe KIAA0456 756 EAIAKFDYVG-RTARE------LSFKKGASLLLY----QRASDDWWE 791 geslggGrrrRGlvPssaveel<-* g+ +G Gl+P++++ ++ KIAA0456 792 GRH--NGID--GLIPHQYIVVQ 809 PF07653.7.fs: domain 1 of 1, from 756 to 809: score 39.0, E = 1.3e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a +dyv+ + ++e Ls+kkG + ++ + +d+wwe KIAA0456 756 EAIAKFDYVG-RTARE------LSFKKGASLLLY----QRASDDWWE 791 geslggGrrrRGlvPssaveel<-* g+ +G Gl+P++++ ++ KIAA0456 792 GRH--NGID--GLIPHQYIVVQ 809 //