hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03301987/chunk_1/iprscan-20080502-03301987.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0455 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00014 79.1 5.3e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00014 1/1 230 374 .. 1 161 [] 79.1 5.3e-19 Alignments of top-scoring domains: SM00014: domain 1 of 1, from 230 to 374: score 79.1, E = 5.3e-19 *->vglllllvaavsalfnlisaiKlvfgrpRPfflslckpdhsavddtd vg+++++ + ++al+++i i+l g + P+fl +ckp ++ ++ KIAA0455 230 VGVHVFG-LCSTALITDI--IQLSTGYQAPYFLTVCKPNYTSLN--- 270 ktrtre.ak.qi.sakdvcctpnfllvleagySFPSGHtafaaafalfll ++ k+ + + d+c + + +++SFPS H+++aa+ a++++ KIAA0455 271 -----VsCKeNSyIVEDICSGSDLTVINSGRKSFPSQHATLAAFAAVYVS 315 lylparatsrgakqiSqlfrllrklliilllllalvvgfSRvylgvHyps y+ +t +++ ll++ll+++++++++++g+ R++ ++ +p+ KIAA0455 316 MYFNSTLTDSSK--------LLKPLLVFTFIICGIICGLTRITQYKNHPV 357 DVlAGlllGilvallll<-* DV G+l+G +al+l KIAA0455 358 DVYCGFLIGGGIALYLG 374 //