hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03301987/chunk_1/iprscan-20080502-03301987.nocrc
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Query sequence: KIAA0455
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01569.12.fs PAP2 superfamily                                76.2    1.2e-20   1
PF01569.12.ls PAP2 superfamily                                78.0    2.7e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01569.12.fs   1/1     229   382 ..     1   177 []    76.2  1.2e-20
PF01569.12.ls   1/1     229   382 ..     1   177 []    78.0  2.7e-20

Alignments of top-scoring domains:
PF01569.12.fs: domain 1 of 1, from 229 to 382: score 76.2, E = 1.2e-20
                   *->aalalllalvaslllnglaylKllfgrpRApPhflavcqpdwgd..s
                      +++ ++++l++++l++++  ++l++g++   P+fl vc+p     ++
    KIAA0455   229    FVGVHVFGLCSTALITDI--IQLSTGYQA--PYFLTVCKPNYTSlnV 271  

                   tcsdlwyeellgyefycmagspgldridlfgsvlltsafalvseagpSFP
                   +c +  y                        +++  s+  ++  ++ SFP
    KIAA0455   272 SCKENSYIVE---------------------DICSGSDLTVINSGRKSFP 300  

                   SGHaafaaafalflalylprrlsklg.rllrlllgllllllallvglSRv
                   S Ha++aa++a++++ y+     + ++ ll++ll++ +++ ++  gl+R+
    KIAA0455   301 SQHATLAAFAAVYVSMYFNS-TLTDSsKLLKPLLVFTFIICGIICGLTRI 349  

                   ylgvHypsDVlaGallGaliaalvllfvrrlld<-*
                     ++ +p+DV  G+l+G +ia+   l+  + +    
    KIAA0455   350 TQYKNHPVDVYCGFLIGGGIALYLGLYAVGNFL    382  

PF01569.12.ls: domain 1 of 1, from 229 to 382: score 78.0, E = 2.7e-20
                   *->aalalllalvaslllnglaylKllfgrpRApPhflavcqpdwgd..s
                      +++ ++++l++++l++++  ++l++g++   P+fl vc+p     ++
    KIAA0455   229    FVGVHVFGLCSTALITDI--IQLSTGYQA--PYFLTVCKPNYTSlnV 271  

                   tcsdlwyeellgyefycmagspgldridlfgsvlltsafalvseagpSFP
                   +c +  y                        +++  s+  ++  ++ SFP
    KIAA0455   272 SCKENSYIVE---------------------DICSGSDLTVINSGRKSFP 300  

                   SGHaafaaafalflalylprrlsklg.rllrlllgllllllallvglSRv
                   S Ha++aa++a++++ y+     + ++ ll++ll++ +++ ++  gl+R+
    KIAA0455   301 SQHATLAAFAAVYVSMYFNS-TLTDSsKLLKPLLVFTFIICGIICGLTRI 349  

                   ylgvHypsDVlaGallGaliaalvllfvrrlld<-*
                     ++ +p+DV  G+l+G +ia+   l+  + +    
    KIAA0455   350 TQYKNHPVDVYCGFLIGGGIALYLGLYAVGNFL    382  

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