hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03090395/chunk_1/iprscan-20080502-03090395.nocrc
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Query sequence: KIAA0443
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04826.4.fs Protein of unknown function (DUF634)           179.5    3.4e-52   2
PF04826.4.ls Protein of unknown function (DUF634)           154.6    2.4e-43   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04826.4.ls   1/1    1141  1393 ..     1   264 []   154.6  2.4e-43
PF04826.4.fs   1/2    1161  1222 ..    20    81 ..    38.0  5.3e-11
PF04826.4.fs   2/2    1242  1370 ..   101   230 ..   141.5  3.8e-41

Alignments of top-scoring domains:
PF04826.4.ls: domain 1 of 1, from 1141 to 1393: score 154.6, E = 2.4e-43
                   *->rrpsrikkfafPy.kiDdiLsaeeLqKvLnLLesTeDPfIqevALit
                      +++      ++ +   +   ++ee++ +L L+e+  DPfI+e+  i+
    KIAA0443  1141    KESTEPESSSCNCiQCELKIGSEEFEELLLLMEKIRDPFIHEISKIA 1187 

                   LGNNAaysfNQeiIReLGGvPIianlintrdPiikEKAliaLNNLSvNvE
                   +G   a  f +++IR+ G+v +i+ l+n ++  ++   l  +      + 
    KIAA0443  1188 MGMRSASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIRMAPPYP 1237 

                   NQrKIkvYvnqVCdDtmssrLNSAVQlaGLrLLTNMTvTNdYQHlLanSi
                   N   I++Y+ +VC++t + + +S+ Ql+G r+   +T+T dY+ l+an+ 
    KIAA0443  1238 NLNIIQTYICKVCEETLAYSVDSPEQLSGIRMIRHLTTTTDYHTLVANYM 1287 

                   sdlFrLLslGNgkTKvqVLKLLlNlsENPaMtreLlsaqVpSsLlSLFNk
                   s++  LL +GN kT+  VLK+LlNlsEN  Mt+eLlsa + S+++ LFN 
    KIAA0443  1288 SGFLSLLATGNAKTRFHVLKMLLNLSENLFMTKELLSAEAVSEFIGLFNR 1337 

                   kvakEiLlnaLtLFeNIndnlkaEgnlanqkeFskGSLFfLlkesgvCak
                   ++ + ++  +L++FeNI +n+k E  +++   F+   L   ++       
    KIAA0443  1338 EETNDNIQIVLAIFENIGNNIKKE-TVFSDDDFNIEPLISAFH------- 1379 

                   KirALasHHDleVKvKVi<-*
                   K+   a+    e  +K     
    KIAA0443  1380 KVEKFAK----ELQGKTD    1393 

PF04826.4.fs: domain 1 of 2, from 1161 to 1222: score 38.0, E = 5.3e-11
                   *->saeeLqKvLnLLesTeDPfIqevALitLGNNAaysfNQeiIReLGGv
                      ++ee++ +L L+e+  DPfI+e+  i++G   a  f +++IR+ G+v
    KIAA0443  1161    GSEEFEELLLLMEKIRDPFIHEISKIAMGMRSASQFTRDFIRDSGVV 1207 

                   PIianlintrdPiik<-*
                    +i+ l+n ++  ++   
    KIAA0443  1208 SLIETLLNYPSSRVR    1222 

PF04826.4.fs: domain 2 of 2, from 1242 to 1370: score 141.5, E = 3.8e-41
                   *->IkvYvnqVCdDtmssrLNSAVQlaGLrLLTNMTvTNdYQHlLanSis
                      I++Y+ +VC++t + + +S+ Ql+G r+   +T+T dY+ l+an+ s
    KIAA0443  1242    IQTYICKVCEETLAYSVDSPEQLSGIRMIRHLTTTTDYHTLVANYMS 1288 

                   dlFrLLslGNgkTKvqVLKLLlNlsENPaMtreLlsaqVpSsLlSLFNkk
                   ++  LL +GN kT+  VLK+LlNlsEN  Mt+eLlsa + S+++ LFN +
    KIAA0443  1289 GFLSLLATGNAKTRFHVLKMLLNLSENLFMTKELLSAEAVSEFIGLFNRE 1338 

                   vakEiLlnaLtLFeNIndnlkaEgnlanqkeFs<-*
                   + + ++  +L++FeNI +n+k E  +++   F+   
    KIAA0443  1339 ETNDNIQIVLAIFENIGNNIKKE-TVFSDDDFN    1370 

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