hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02441259/chunk_1/iprscan-20080502-02441259.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0428 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00356 108.4 8.2e-28 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00356 1/4 17 43 .. 1 31 [] 26.8 0.0029 SM00356 2/4 50 75 .. 1 31 [] 21.0 0.17 SM00356 3/4 182 209 .. 1 31 [] 37.3 2.1e-06 SM00356 4/4 219 243 .. 1 31 [] 23.3 0.035 Alignments of top-scoring domains: SM00356: domain 1 of 4, from 17 to 43: score 26.8, E = 0.0029 *->kyktelCkfFarrGppgyCpyGd.rCkfaHpl<-* + e+C+ F +rG +C++ d++CkfaHp KIAA0428 17 LTL-EVCREF-QRG---TCSRPDtECKFAHPS 43 SM00356: domain 2 of 4, from 50 to 75: score 21.0, E = 0.17 *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-* + + +C + ++G +C++ +Ck++Hp+ KIAA0428 50 NGRVIACFDS-LKG---RCSRE-NCKYLHPP 75 SM00356: domain 3 of 4, from 182 to 209: score 37.3, E = 2.1e-06 *->kyktelCkfFarrGppgyCpyGd.rCkfaHpl<-* +++ e+C+ + +rG +C++G+++C+faHp KIAA0428 182 TDRLEVCREY-QRG---NCNRGEnDCRFAHPA 209 SM00356: domain 4 of 4, from 219 to 243: score 23.3, E = 0.035 *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-* ++ ++C+++ +G +C++ +Ck+ Hp+ KIAA0428 219 NTV-TVCMDY-IKG---RCSRE-KCKYFHPP 243 //