hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02423581/chunk_1/iprscan-20080502-02423581.nocrc
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Query sequence: KIAA0427
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00543                                                 132.8    3.8e-35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00543    1/1     379   580 ..     1   227 []   132.8  3.8e-35

Alignments of top-scoring domains:
SM00543: domain 1 of 1, from 379 to 580: score 132.8, E = 3.8e-35
                   *->ekkvnglinkLs..pdnfeslikellklnndlleeeDPnendkellk
                      ++ +n+++n+ s+ ++++++ ++e  +  n++           e+l 
    KIAA0427   379    IEILNSMRNNSSdvDTKLTTFMEEAQNSTNSE-----------EMLG 414  

                   elielifekaveepglqDklnfipayArLcalLnaknp...dFgsllldr
                   e++++i++kav+        +f+ + A+Lc ++++++ +++ F+slll++
    KIAA0427   415 EIVRTIYQKAVSDR------SFAFTAAKLCDKMALFMVegtKFRSLLLNM 458  

                   lqeeFekrkddeekeklepkQvicdaeeeeleeleeeeeknrkrrlglvr
                   lq++F++                          +ee+++++ +r+lg+++
    KIAA0427   459 LQKDFTV--------------------------REELQQQDVERWLGFIT 482  

                   FlgELynfqvltskiilellkelledlte..........fslecllslLe
                   Fl+E +  +  ++ + +++l + +  ++++  ++++ +++ + c+ + L+
    KIAA0427   483 FLCEVFGTMRSSTGEPFRVLVCPIYTCLRellqsqdvkeDAVLCCSMELQ 532  

                   tcGkdLeekspklldellerlqdill...lsprlrfmledlielrknk<-
                   ++G++Lee++p+ ++ell+  +d++l +++s+ +r +l+ +iel++n   
    KIAA0427   533 STGRLLEEQLPEMMTELLASARDKMLcpsESMLTRSLLLEVIELHANS   580  

                   *
                    
    KIAA0427     -   -    

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