hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02372739/chunk_1/iprscan-20080502-02372739.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0424 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00325 226.2 2.9e-63 1 SM00326 66.4 3.7e-15 1 SM00233 49.7 3.8e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00326 1/1 62 117 .. 1 58 [] 66.4 3.7e-15 SM00325 1/1 158 337 .. 1 211 [] 226.2 2.9e-63 SM00233 1/1 370 478 .. 1 82 [] 49.7 3.8e-10 Alignments of top-scoring domains: SM00326: domain 1 of 1, from 62 to 117: score 66.4, E = 3.7e-15 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG + + A++D+ EL Fk+GD+i vl+ s+ +Ww+G+++ +eG KIAA0424 62 VSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--DEEG 106 lfPsnYVeeie<-* +fP+++V++ KIAA0424 107 WFPASFVRLWV 117 SM00325: domain 1 of 1, from 158 to 337: score 226.2, E = 2.9e-63 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl v++E++ TEr+Y+++Lk + e++lk+++k+ + ++s++++k + KIAA0424 158 VINEIMSTERHYIKHLKDICEGYLKQCRKRRD-----MFSDEQLKVI 199 FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv Fg Nie+iy+f++ F +Le+ ++ + ++ +ig + KIAA0424 200 FG-NIEDIYRFQMGFVRDLEKQYNNDD--------------PHLSEIGPC 234 FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk Fl++ ++ f iYseYc+nh da l+kLm k++++q+f++ + + KIAA0424 235 FLEH---QDGFWIYSEYCNNHLDACMELSKLM---KDSRYQHFFEACRLL 278 pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk ++++ + ++ +L++PvQ ++kYpL L ellk+t dh+d+ + KIAA0424 279 QQMI-----DIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAA 323 AleaikelasqvNe<-* Al++++++++q+Ne KIAA0424 324 ALAVMRNVTQQINE 337 SM00233: domain 1 of 1, from 370 to 478: score 49.7, E = 3.8e-10 *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk.......kpkgs +i+ G + + ++ ++ ++r f+Lf+++++++k++ +++ +kg+ KIAA0424 370 LIYTGEMAWIYqpYgRNQQRVFFLFDHQMVLCKKDlirrdilYYKGR 416 ipLsgcsvre.p.............cFeivt.dr..tlllqAeseeeree i++++++v++ +++++++ + + +++F++++++ ++ +l++A+ ee+ + KIAA0424 417 IDMDKYEVVDiEdgrdddfnvsmknAFKLHNkETeeIHLFFAKKLEEKIR 466 Wvealqsaiaka<-* W++a+++ + KIAA0424 467 WLRAFREERKMV 478 //