hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02304894/chunk_1/iprscan-20080502-02304894.nocrc
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Query sequence: KIAA0420
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF04707.4.fs MSF1-like conserved region                  264.4    7.7e-78   1
PF04707.4.ls MSF1-like conserved region                  266.3    5.7e-77   1
PF00650.10.fs CRAL/TRIO domain                            160.7    4.3e-47   1
PF00650.10.ls CRAL/TRIO domain                            162.7    8.7e-46   1
PF03765.5.fs CRAL/TRIO, N-terminus                        51.9    3.5e-15   1
PF03765.5.ls CRAL/TRIO, N-terminus                        53.7    5.7e-13   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF04707.4.fs   1/1      77   233 ..     1   164 []   264.4  7.7e-78
PF04707.4.ls   1/1      77   233 ..     1   164 []   266.3  5.7e-77
PF03765.5.fs   1/1     293   360 ..     1    89 []    51.9  3.5e-15
PF03765.5.ls   1/1     293   360 ..     1    89 []    53.7  5.7e-13
PF00650.10.ls   1/1     375   563 ..     1   188 []   162.7  8.7e-46
PF00650.10.fs   1/1     375   563 ..     1   188 []   160.7  4.3e-47

Alignments of top-scoring domains:
PF04707.4.fs: domain 1 of 1, from 77 to 233: score 264.4, E = 7.7e-78
                   *->eqVtaAfwrrYPNCPysphVisvDVleRkvddedGkVLhTeRlltkq
                      e+V+aA+++r+P+CP++p++++++Vl++  ++ dG+V+++eR ++++
    KIAA0420    77    ELVMAAYEKRFPTCPQIPVFLGSEVLRESRSP-DGAVHVVERSCRLR 122  

                   grlPrWlkkVligvadtvYvlEeSvvDpkkrtLtleTrNltfssrlsVdE
                   +++Pr+l+k ++gv+++v+v+ ++++++k+rtL +e++N+tf++r++V+E
    KIAA0420   123 VDAPRLLRK-IAGVEHVVFVQ-TNILNWKERTLLIEAHNETFANRVVVNE 170  

                   rctYtpHpeNpsnwTvfkQeAsissvkgslfglsskvEkwslkrFseNak
                   +c Yt+HpeN+ +wT+f+Q+As++ +++ +fg+++++Ek+++k++++N+k
    KIAA0420   171 HCSYTVHPENE-DWTCFEQSASLD-IRS-FFGFENALEKIAMKQYTANVK 217  

                   KGreGlEyvleefleee<-*
                   +G+e++E++l+e l  +   
    KIAA0420   218 RGKEVIEHYLNE-LISQ    233  

PF04707.4.ls: domain 1 of 1, from 77 to 233: score 266.3, E = 5.7e-77
                   *->eqVtaAfwrrYPNCPysphVisvDVleRkvddedGkVLhTeRlltkq
                      e+V+aA+++r+P+CP++p++++++Vl++  ++ dG+V+++eR ++++
    KIAA0420    77    ELVMAAYEKRFPTCPQIPVFLGSEVLRESRSP-DGAVHVVERSCRLR 122  

                   grlPrWlkkVligvadtvYvlEeSvvDpkkrtLtleTrNltfssrlsVdE
                   +++Pr+l+k ++gv+++v+v+ ++++++k+rtL +e++N+tf++r++V+E
    KIAA0420   123 VDAPRLLRK-IAGVEHVVFVQ-TNILNWKERTLLIEAHNETFANRVVVNE 170  

                   rctYtpHpeNpsnwTvfkQeAsissvkgslfglsskvEkwslkrFseNak
                   +c Yt+HpeN+ +wT+f+Q+As++ +++ +fg+++++Ek+++k++++N+k
    KIAA0420   171 HCSYTVHPENE-DWTCFEQSASLD-IRS-FFGFENALEKIAMKQYTANVK 217  

                   KGreGlEyvleefleee<-*
                   +G+e++E++l+e l  +   
    KIAA0420   218 RGKEVIEHYLNE-LISQ    233  

PF03765.5.fs: domain 1 of 1, from 293 to 360: score 51.9, E = 3.5e-15
                   *->gtpgnltpeqeraykskLkeetLkelryelseknkteeldkgykerl
                      + +g+ltp q         e+ L +lr  l+           +k+++
    KIAA0420   293    RCLGHLTPMQ---------ESCLIQLRHWLQ---------ETHKGKI 321  

                   kawldDatlLRFLRARKFdvaaAiemltktlkWRrEfGvnei<-*
                      + D++ LRFLRA +F++++A eml+ +l WR+++ v+ +   
    KIAA0420   322 ---PKDEHILRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLL    360  

PF03765.5.ls: domain 1 of 1, from 293 to 360: score 53.7, E = 5.7e-13
                   *->gtpgnltpeqeraykskLkeetLkelryelseknkteeldkgykerl
                      + +g+ltp q         e+ L +lr  l+           +k+++
    KIAA0420   293    RCLGHLTPMQ---------ESCLIQLRHWLQ---------ETHKGKI 321  

                   kawldDatlLRFLRARKFdvaaAiemltktlkWRrEfGvnei<-*
                      + D++ LRFLRA +F++++A eml+ +l WR+++ v+ +   
    KIAA0420   322 ---PKDEHILRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLL    360  

PF00650.10.ls: domain 1 of 1, from 375 to 563: score 162.7, E = 8.7e-46
                   *->pqfihgtdkdGrpvylekrGklntkvmlkittlhrmlkklvyeverl
                       + +h  d dGrp+y++++G+ +tk+++k +  ++ l   v++v + 
    KIAA0420   375    AGGWHYQDIDGRPLYILRLGQMDTKGLMK-AVGEEALLRHVLSVNEE 420  

                   tlyrlpaasrklgtlingsctvfDlkGvsmssmaspvlsvlkkvinilqd
                    ++r +  +r lg +i++++  +Dl+G++m+++++p++  l+ +i++++d
    KIAA0420   421 GQKRCEGSTRQLGRPISSWTCLLDLEGLNMRHLWRPGVKALLRMIEVVED 470  

                   yYPErlgkfylinaPwlFstvyklIKpFLDektrsKifvlGss.Ykee..
                   +YPE+lg++++++aP++F+++++lI+pF+ e tr K+ ++ +s+Y+++++
    KIAA0420   471 NYPETLGRLLIVRAPRVFPVLWTLISPFINENTRRKFLIYSGSnYQGPgg 520  

                   LlkhipaenLPakfGGtlktkydkcgvwlsdvgpwrdeeqigfe<-*
                   L+ ++++e +P+++GG++ + +  +g +++++ +  +eeq+  +   
    KIAA0420   521 LVDYLDREVIPDFLGGES-VCNVPEGGLVPKSLYMTEEEQEHTD    563  

PF00650.10.fs: domain 1 of 1, from 375 to 563: score 160.7, E = 4.3e-47
                   *->pqfihgtdkdGrpvylekrGklntkvmlkittlhrmlkklvyeverl
                       + +h  d dGrp+y++++G+ +tk+++k +  ++ l   v++v + 
    KIAA0420   375    AGGWHYQDIDGRPLYILRLGQMDTKGLMK-AVGEEALLRHVLSVNEE 420  

                   tlyrlpaasrklgtlingsctvfDlkGvsmssmaspvlsvlkkvinilqd
                    ++r +  +r lg +i++++  +Dl+G++m+++++p++  l+ +i++++d
    KIAA0420   421 GQKRCEGSTRQLGRPISSWTCLLDLEGLNMRHLWRPGVKALLRMIEVVED 470  

                   yYPErlgkfylinaPwlFstvyklIKpFLDektrsKifvlGss.Ykee..
                   +YPE+lg++++++aP++F+++++lI+pF+ e tr K+ ++ +s+Y+++++
    KIAA0420   471 NYPETLGRLLIVRAPRVFPVLWTLISPFINENTRRKFLIYSGSnYQGPgg 520  

                   LlkhipaenLPakfGGtlktkydkcgvwlsdvgpwrdeeqigfe<-*
                   L+ ++++e +P+++GG++ + +  +g +++++ +  +eeq+  +   
    KIAA0420   521 LVDYLDREVIPDFLGGES-VCNVPEGGLVPKSLYMTEEEQEHTD    563  

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