# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg02987.fasta.huge -Q ../query/KIAA0420.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0420, 756 aa
 vs ./tmplib.23147 library

1986749 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.7462+/-0.00493; mu= 18.0496+/- 0.336
 mean_var=91.0614+/-20.928, 0's: 0 Z-trim: 1  B-trim: 16 in 1/39
 Lambda= 0.134402

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1186  ( 405 res)   pj00504                     ( 405)  684 142.7 7.1e-35


>>KIAA1186  ( 405 res)   pj00504                          (405 aa)
 initn: 615 init1: 435 opt: 684  Z-score: 718.0  bits: 142.7 E(): 7.1e-35
Smith-Waterman score: 684;  33.884% identity (65.289% similar) in 363 aa overlap (295-640:7-355)

          270       280       290       300       310        320   
KIAA04 AHGPRSTLGPALEAVSMDGDKLDADYIERCLGHLTPMQESCLIQLRHWLQETHKG-KIPK
                                     .: :.: :.  : ..:. .:..  .   : 
KIAA11                         ATMSGRVGDLSPRQKEALAKFRENVQDVLPALPNPD
                                       10        20        30      

           330       340       350       360       370       380   
KIAA04 DEHILRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLLLQTWQPPALLEEFYAGGWHYQDI
       :  .::.:::..: :.:.. :::. . .:::...: .. .:::: ..... .::    :.
KIAA11 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII-SWQPPEVIQQYLSGGMCGYDL
         40        50        60        70         80        90     

           390       400       410       420       430       440   
KIAA04 DGRPLYILRLGQMDTKGLMKAVGEEALLRHVLSVNEEGQKRCEGSTRQLGRPISSWTCLL
       :: :..   .: .:.:::. ..... :::  .   :   ..:  .: .::: . . : . 
KIAA11 DGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIY
         100       110       120       130       140       150     

           450       460       470       480       490       500   
KIAA04 DLEGLNMRHLWRPGVKALLRMIEVVEDNYPETLGRLLIVRAPRVFPVLWTLISPFINENT
       : :::...:::.:.:.:  ... . :.:::::: ::..:.::..::: ..::.::..:.:
KIAA11 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDT
         160       170       180       190       200       210     

           510              520        530       540         550   
KIAA04 RRKFLIYSGSNYQ-------GPGGL-VDYLDREVIPDFLGGESVCN--VPEGGLVPKSLY
       :.:...  :.:..       .:  . :.:    . ::   :.  :.  .  :: .:.. :
KIAA11 RKKIMVL-GANWKEVLLKHISPDQVPVEYGGTMTDPD---GNPKCKSKINYGGDIPRKYY
         220        230       240       250          260       270 

           560       570       580       590       600       610   
KIAA04 MTEEEQEHTDQLWQWSETYHSASVLRGAPHEVAVEILEGESVITWDFDILRGDVVFSLY-
       .        ::. :  :  ::... ::. :.:  :::    :. :.:    .:: :... 
KIAA11 VR-------DQVKQQYE--HSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFL
                    280         290       300       310       320  

            620            630       640       650       660       
KIAA04 HTKQAPRLGARE-----PGTRASGQLIDKGWVLGRDYSRVEAPLVCREGESIQGSHVTRW
       .::.. :  : :     :. : ...:. .  .:                           
KIAA11 KTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFT
            330       340       350       360       370       380  

       670       680       690       700       710       720       
KIAA04 PGVYLLQWQMHSPPSSVACSLPGVDDVLTALHSPGPKCKLLYYCEVLASEDFRGSMSSLE
                                                                   
KIAA11 VEVLLPDKASEEKMKQLGAGTPK                                     
            390       400                                          




756 residues in 1 query   sequences
1986749 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:20:53 2008 done: Thu Dec 18 15:20:54 2008
 Total Scan time:  0.570 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]