hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02271617/chunk_1/iprscan-20080502-02271617.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0418 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00018.18.ls SH3 domain 184.0 3.5e-52 5 PF00018.18.fs SH3 domain 183.1 6.1e-52 5 PF07653.7.ls Variant SH3 domain 156.1 8.7e-44 5 PF07653.7.fs Variant SH3 domain 147.2 9e-42 5 PF08239.2.fs Bacterial SH3 domain 64.8 5.7e-18 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00018.18.fs 1/5 53 107 .. 1 59 [] 50.2 6.1e-13 PF00018.18.ls 1/5 53 107 .. 1 59 [] 52.1 1.7e-12 PF07653.7.ls 1/5 54 107 .. 1 69 [] 49.7 9.2e-12 PF07653.7.fs 1/5 54 107 .. 1 69 [] 47.9 3.7e-13 PF00018.18.ls 2/5 125 179 .. 1 59 [] 46.8 6.6e-11 PF00018.18.fs 2/5 125 179 .. 1 59 [] 44.9 1.7e-11 PF07653.7.fs 2/5 126 179 .. 1 69 [] 42.8 1.1e-11 PF07653.7.ls 2/5 126 179 .. 1 69 [] 44.5 3.2e-10 PF00018.18.ls 3/5 307 361 .. 1 59 [] 29.1 1.4e-05 PF07653.7.ls 3/5 308 361 .. 1 69 [] 26.4 9.4e-05 PF07653.7.fs 3/5 308 361 .. 1 69 [] 24.6 1.9e-06 PF00018.18.fs 3/5 323 361 .. 17 59 .] 28.7 4.5e-07 PF00018.18.ls 4/5 699 753 .. 1 59 [] 32.2 1.6e-06 PF07653.7.ls 4/5 700 753 .. 1 69 [] 16.4 0.0077 PF00018.18.fs 4/5 706 753 .. 8 59 .] 32.1 5.2e-08 PF08239.2.fs 4/5 716 751 .. 18 55 .] 21.5 2e-05 PF00018.18.ls 5/5 931 988 .. 1 59 [] 23.7 6.2e-05 PF07653.7.ls 5/5 932 988 .. 1 69 [] 19.1 0.0033 PF00018.18.fs 5/5 954 988 .. 25 59 .] 27.2 1.2e-06 Alignments of top-scoring domains: PF00018.18.fs: domain 1 of 5, from 53 to 107: score 50.2, E = 6.1e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +++v+ Y+++e +ELs++ G+v+ v+ek+++ gWW++ + KIAA0418 53 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNES-GWWFVSTSE---E 95 eGliPsNYVepv<-* +G++P++Y+e KIAA0418 96 QGWVPATYLEAQ 107 PF00018.18.ls: domain 1 of 5, from 53 to 107: score 52.1, E = 1.7e-12 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +++v+ Y+++e +ELs++ G+v+ v+ek+++ gWW++ + KIAA0418 53 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNES-GWWFVSTSE---E 95 eGliPsNYVepv<-* +G++P++Y+e KIAA0418 96 QGWVPATYLEAQ 107 PF07653.7.ls: domain 1 of 5, from 54 to 107: score 49.7, E = 9.2e-12 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++++ +y+ + ++e Lsl++G+vv Vi +k+ gww+ KIAA0418 54 QYVVVSNYKK-QENSE------LSLQAGEVVDVI----EKNESGWWF 89 geslggGrrrRGlvPssaveel<-* +++ + G+vP++++e + KIAA0418 90 VST--SEEQ--GWVPATYLEAQ 107 PF07653.7.fs: domain 1 of 5, from 54 to 107: score 47.9, E = 3.7e-13 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++++ +y+ + ++e Lsl++G+vv Vi +k+ gww+ KIAA0418 54 QYVVVSNYKK-QENSE------LSLQAGEVVDVI----EKNESGWWF 89 geslggGrrrRGlvPssaveel<-* +++ + G+vP++++e + KIAA0418 90 VST--SEEQ--GWVPATYLEAQ 107 PF00018.18.ls: domain 2 of 5, from 125 to 179: score 46.8, E = 6.6e-11 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +k+v +Y+ ++ dE+ F+kG +++v+ k+ + gWW+ r++ Gk KIAA0418 125 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLE-GWWYIRYL---GK 167 eGliPsNYVepv<-* eG+ P++Y+ + KIAA0418 168 EGWAPASYLKKA 179 PF00018.18.fs: domain 2 of 5, from 125 to 179: score 44.9, E = 1.7e-11 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +k+v +Y+ ++ dE+ F+kG +++v+ k+ + gWW+ r++ Gk KIAA0418 125 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLE-GWWYIRYL---GK 167 eGliPsNYVepv<-* eG+ P++Y+ + KIAA0418 168 EGWAPASYLKKA 179 PF07653.7.fs: domain 2 of 5, from 126 to 179: score 42.8, E = 1.1e-11 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++++++ y++ ++k+e + ++kG +v+Vi k+ +gww+ KIAA0418 126 KYVTVQPYTS-QSKDE------IGFEKGVTVEVI----RKNLEGWWY 161 geslggGrrrRGlvPssaveel<-* + G++ G++P+s++++ KIAA0418 162 IRY--LGKE--GWAPASYLKKA 179 PF07653.7.ls: domain 2 of 5, from 126 to 179: score 44.5, E = 3.2e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++++++ y++ ++k+e + ++kG +v+Vi k+ +gww+ KIAA0418 126 KYVTVQPYTS-QSKDE------IGFEKGVTVEVI----RKNLEGWWY 161 geslggGrrrRGlvPssaveel<-* + G++ G++P+s++++ KIAA0418 162 IRY--LGKE--GWAPASYLKKA 179 PF00018.18.ls: domain 3 of 5, from 307 to 361: score 29.1, E = 1.4e-05 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk + + ++ sd +sF+ G + +v++k+ + gWW+++ k KIAA0418 307 VEYYTIAEFQSCISDGISFRGGQKAEVIDKNSG-GWWYVQIGE---K 349 eGliPsNYVepv<-* eG+ P++Y+++ KIAA0418 350 EGWAPASYIDKR 361 PF07653.7.ls: domain 3 of 5, from 308 to 361: score 26.4, E = 9.4e-05 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe + +i ++ + + ++ +s++ G++ +Vi +k+++gww+ KIAA0418 308 EYYTIAEFQS-CISDG------ISFRGGQKAEVI----DKNSGGWWY 343 geslggGrrrRGlvPssaveel<-* + g ++ G++P+s++ + KIAA0418 344 VQI--GEKE--GWAPASYIDKR 361 PF07653.7.fs: domain 3 of 5, from 308 to 361: score 24.6, E = 1.9e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe + +i ++ + + ++ +s++ G++ +Vi +k+++gww+ KIAA0418 308 EYYTIAEFQS-CISDG------ISFRGGQKAEVI----DKNSGGWWY 343 geslggGrrrRGlvPssaveel<-* + g ++ G++P+s++ + KIAA0418 344 VQI--GEKE--GWAPASYIDKR 361 PF00018.18.fs: domain 3 of 5, from 323 to 361: score 28.7, E = 4.5e-07 *->LsFkkGDvitvleksddpgWWkgrlkgtgGkeGliPsNYVepv<-* +sF+ G + +v++k+ + gWW+++ keG+ P++Y+++ KIAA0418 323 ISFRGGQKAEVIDKNSG-GWWYVQIGE---KEGWAPASYIDKR 361 PF00018.18.ls: domain 4 of 5, from 699 to 753: score 32.2, E = 1.6e-06 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk + + +Y++++++E+sF G +++vlek+++ gWW++r KIAA0418 699 TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQES-GWWYVRFGE---L 741 eGliPsNYVepv<-* eG+ Ps Y+ + KIAA0418 742 EGWAPSHYLVLD 753 PF07653.7.ls: domain 4 of 5, from 700 to 753: score 16.4, E = 0.0077 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww + ++ y +e +s+ +G v V+ +++++gww KIAA0418 700 SYMTCSAYQK-VQDSE------ISFPAGVEVQVL-----EKQEsGWW 734 egeslggGrrrRGlvPssaveel<-* +++ g + G++Ps+++ + KIAA0418 735 YVRF--GELE--GWAPSHYLVLD 753 PF00018.18.fs: domain 4 of 5, from 706 to 753: score 32.1, E = 5.2e-08 *->DYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGkeGliPsN +Y++++++E+sF G +++vlek+++ gWW++r eG+ Ps KIAA0418 706 AYQKVQDSEISFPAGVEVQVLEKQES-GWWYVRFGE---LEGWAPSH 748 YVepv<-* Y+ + KIAA0418 749 YLVLD 753 PF08239.2.fs: domain 4 of 5, from 716 to 751: score 21.5, E = 2e-05 *->qlpkGtkVtvlge.engngWykIeynGktGYVlssdYvs<-* ++p+G V+vl+++e+g W +++++ +G++ s+Y++ KIAA0418 716 SFPAGVEVQVLEKqESG--WWYVRFGELEGWA-PSHYLV 751 PF00018.18.ls: domain 5 of 5, from 931 to 988: score 23.7, E = 6.2e-05 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgG. +++v + DYe+ e+ F++G ++vle++++ gWW+++ ++ G KIAA0418 931 DVYVSIADYEGDEETA-GFQEGVSMEVLERNPN-GWWYCQILD--Gv 973 ..keGliPsNYVepv<-* ++ +G++PsNY+e++ KIAA0418 974 kpFKGWVPSNYLEKK 988 PF07653.7.ls: domain 5 of 5, from 932 to 988: score 19.1, E = 0.0033 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +++ i dy++ +++ +++G +V+ +++++gww+ KIAA0418 932 VYVSIADYEG-DEETA-------GFQEGVSMEVL----ERNPNGWWY 966 g.eslggGrr.rRGlvPssaveel<-* ++ + +G+++ G+vPs+++e+ KIAA0418 967 CqIL--DGVKpFKGWVPSNYLEKK 988 PF00018.18.fs: domain 5 of 5, from 954 to 988: score 27.2, E = 1.2e-06 *->itvleksddpgWWkgrlkgtgG...keGliPsNYVepv<-* ++vle++++ gWW+++ ++ G ++ +G++PsNY+e++ KIAA0418 954 MEVLERNPN-GWWYCQILD--GvkpFKGWVPSNYLEKK 988 //