hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02203806/chunk_1/iprscan-20080502-02203806.nocrc
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Query sequence: KIAA0414
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00651.21.ls BTB/POZ domain                                 122.2    1.4e-33   1
PF00651.21.fs BTB/POZ domain                                 120.4    4.2e-33   1
PF00096.16.ls Zinc finger, C2H2 type                          69.7    8.7e-18   3
PF00096.16.fs Zinc finger, C2H2 type                          63.8    5.1e-16   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      48   152 ..     1   135 []   120.4  4.2e-33
PF00651.21.ls   1/1      48   152 ..     1   135 []   122.2  1.4e-33
PF00096.16.ls   1/3     398   419 ..     1    24 []    21.7   0.0025
PF00096.16.fs   2/3     425   447 ..     1    24 []    25.2  4.9e-05
PF00096.16.ls   2/3     425   447 ..     1    24 []    27.2  5.4e-05
PF00096.16.ls   3/3     453   475 ..     1    24 []    20.8   0.0045

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 48 to 152: score 120.4, E = 4.2e-33
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln++r+qg+lcDV +vv+        g+ f+AHKavLaa+SpYF + 
    KIAA0414    48    LNQQRQQGQLCDVSIVVQ--------GHIFRAHKAVLAASSPYFCDQ 86   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                    + +       + +    ++  + ++p +fe++L   Ytg+l ++     
    KIAA0414    87 VLLK-------NSRR---IVLPDVMNPRVFENILLSSYTGRLVMP----- 121  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                            ++++L aA ++lq++++vd+C+e l  +    
    KIAA0414   122 ------APEIVSYLTAA-SFLQMWHVVDKCTEVLEGNP    152  

PF00651.21.ls: domain 1 of 1, from 48 to 152: score 122.2, E = 1.4e-33
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln++r+qg+lcDV +vv+        g+ f+AHKavLaa+SpYF + 
    KIAA0414    48    LNQQRQQGQLCDVSIVVQ--------GHIFRAHKAVLAASSPYFCDQ 86   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                    + +       + +    ++  + ++p +fe++L   Ytg+l ++     
    KIAA0414    87 VLLK-------NSRR---IVLPDVMNPRVFENILLSSYTGRLVMP----- 121  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                            ++++L aA ++lq++++vd+C+e l  +    
    KIAA0414   122 ------APEIVSYLTAA-SFLQMWHVVDKCTEVLEGNP    152  

PF00096.16.ls: domain 1 of 3, from 398 to 419: score 21.7, E = 0.0025
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  CgksF++ks+  rH+ +H   
    KIAA0414   398    YPCQ--CGKSFTHKSQRDRHMSMH    419  

PF00096.16.fs: domain 2 of 3, from 425 to 447: score 25.2, E = 4.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cgk+F+ k++L  H+++H   
    KIAA0414   425    YGCG-VCGKKFKMKHHLVGHMKIH    447  

PF00096.16.ls: domain 2 of 3, from 425 to 447: score 27.2, E = 5.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cgk+F+ k++L  H+++H   
    KIAA0414   425    YGCG-VCGKKFKMKHHLVGHMKIH    447  

PF00096.16.ls: domain 3 of 3, from 453 to 475: score 20.8, E = 0.0045
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C k+F  +++++rH  ++   
    KIAA0414   453    YECN-ICAKRFMWRDSFHRHVTSC    475  

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