hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02171696/chunk_1/iprscan-20080502-02171696.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0412 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 355.0 4.7e-102 13 SM00349 136.1 3.7e-36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 107 167 .. 1 62 [] 136.1 3.7e-36 SM00355 1/13 296 318 .. 1 23 [] 26.1 0.005 SM00355 2/13 324 346 .. 1 23 [] 24.2 0.018 SM00355 3/13 352 374 .. 1 23 [] 30.6 0.00022 SM00355 4/13 380 402 .. 1 23 [] 28.2 0.0011 SM00355 5/13 408 430 .. 1 23 [] 27.7 0.0016 SM00355 6/13 436 458 .. 1 23 [] 26.5 0.0038 SM00355 7/13 464 486 .. 1 23 [] 25.7 0.0064 SM00355 8/13 492 514 .. 1 23 [] 29.0 0.00066 SM00355 9/13 520 542 .. 1 23 [] 20.9 0.18 SM00355 10/13 548 570 .. 1 23 [] 30.3 0.00026 SM00355 11/13 576 598 .. 1 23 [] 28.1 0.0012 SM00355 12/13 604 626 .. 1 23 [] 25.3 0.0085 SM00355 13/13 632 654 .. 1 23 [] 32.5 5.7e-05 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 107 to 167: score 136.1, E = 3.7e-36 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF+DVAV+F++EEW+qLD aQr+LY++VMlEN++ LvSLG ++v+k KIAA0412 107 VTFDDVAVTFTKEEWGQLDLAQRTLYQEVMLENCGLLVSLG-CPVPK 152 pdliskLEqgeEpwi<-* +li+ LE g+Epw+ KIAA0412 153 AELICHLEHGQEPWT 167 SM00355: domain 1 of 13, from 296 to 318: score 26.1, E = 0.005 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk+f+ k+ L H ++H KIAA0412 296 FKCSE-CGKVFNKKhLLAGHEKIH 318 SM00355: domain 2 of 13, from 324 to 346: score 24.2, E = 0.018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f ++L +H ++H KIAA0412 324 YECTE-CGKTFIKStHLLQHHMIH 346 SM00355: domain 3 of 13, from 352 to 374: score 30.6, E = 0.00022 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk f++k+ L++H+r+H KIAA0412 352 YECME-CGKAFNRKsYLTQHQRIH 374 SM00355: domain 4 of 13, from 380 to 402: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+++++++ H r+H KIAA0412 380 YKCNE-CGKAFTHRsNFVLHNRRH 402 SM00355: domain 5 of 13, from 408 to 430: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cg++f++++ + rH+ vH KIAA0412 408 FVCTE-CGQVFRHRpGFLRHYVVH 430 SM00355: domain 6 of 13, from 436 to 458: score 26.5, E = 0.0038 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk+f++++ L H+++H KIAA0412 436 YECLE-CGKVFKHRsYLMWHQQTH 458 SM00355: domain 7 of 13, from 464 to 486: score 25.7, E = 0.0064 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f aL++H+ +H KIAA0412 464 YECSE-CGKVFLESaALIHHYVIH 486 SM00355: domain 8 of 13, from 492 to 514: score 29.0, E = 0.00066 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cgk f++++ LkrH+r+H KIAA0412 492 FECLE-CGKAFNHRsYLKRHQRIH 514 SM00355: domain 9 of 13, from 520 to 542: score 20.9, E = 0.18 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f++ + ++ H r H KIAA0412 520 FVCSE-CGKAFTHCsTFILHKRAH 542 SM00355: domain 10 of 13, from 548 to 570: score 30.3, E = 0.00026 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk fs++++L+rH +H KIAA0412 548 FECKE-CGKAFSNRkDLIRHFSIH 570 SM00355: domain 11 of 13, from 576 to 598: score 28.1, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk f++ + L+rH r+H KIAA0412 576 YECVE-CGKAFTRMsGLTRHKRIH 598 SM00355: domain 12 of 13, from 604 to 626: score 25.3, E = 0.0085 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksf++ ++L+rH +H KIAA0412 604 YECVE-CGKSFCWStNLIRHAIIH 626 SM00355: domain 13 of 13, from 632 to 654: score 32.5, E = 5.7e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ ++L++H+r+H KIAA0412 632 YKCSE-CGKAFSRSsSLTQHQRMH 654 //