hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02171696/chunk_1/iprscan-20080502-02171696.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0412 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 412.1 7.2e-121 13 PF00096.16.fs Zinc finger, C2H2 type 386.5 3.6e-113 13 PF01352.17.fs KRAB box 91.8 1.8e-25 1 PF01352.17.ls KRAB box 93.8 4.7e-25 1 PF01286.9.fs XPA protein N-terminal 68.8 7.5e-19 12 PF01096.9.fs Transcription factor S-II (TFIIS) 54.8 2.9e-16 11 PF08790.1.fs LYAR-type C2HC zinc finger 20.3 4.6e-05 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 107 147 .. 1 41 [] 91.8 1.8e-25 PF01352.17.ls 1/1 107 147 .. 1 41 [] 93.8 4.7e-25 PF00096.16.ls 1/13 296 318 .. 1 24 [] 29.6 1e-05 PF00096.16.fs 1/13 296 318 .. 1 24 [] 27.6 1.2e-05 PF00096.16.ls 2/13 324 346 .. 1 24 [] 28.4 2.3e-05 PF00096.16.fs 2/13 324 346 .. 1 24 [] 26.5 2.4e-05 PF00096.16.ls 3/13 352 374 .. 1 24 [] 36.7 7.6e-08 PF00096.16.fs 3/13 352 374 .. 1 24 [] 34.7 2.1e-07 PF00096.16.ls 4/13 380 402 .. 1 24 [] 31.6 2.5e-06 PF00096.16.fs 4/13 380 402 .. 1 24 [] 29.7 3.8e-06 PF00096.16.ls 5/13 408 430 .. 1 24 [] 25.8 0.00014 PF00096.16.fs 5/13 408 430 .. 1 24 [] 23.9 0.00011 PF00096.16.ls 6/13 436 458 .. 1 24 [] 33.3 7.7e-07 PF00096.16.fs 6/13 436 458 .. 1 24 [] 31.4 1.4e-06 PF00096.16.ls 7/13 464 486 .. 1 24 [] 24.4 0.00038 PF00096.16.fs 8/13 492 514 .. 1 24 [] 34.3 2.7e-07 PF00096.16.ls 8/13 492 514 .. 1 24 [] 36.3 1e-07 PF00096.16.fs 9/13 520 542 .. 1 24 [] 26.2 2.8e-05 PF00096.16.ls 9/13 520 542 .. 1 24 [] 28.2 2.7e-05 PF00096.16.ls 10/13 548 570 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 10/13 548 570 .. 1 24 [] 30.2 2.9e-06 PF00096.16.ls 11/13 576 598 .. 1 24 [] 35.9 1.3e-07 PF00096.16.fs 11/13 576 598 .. 1 24 [] 33.9 3.3e-07 PF00096.16.fs 12/13 604 626 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 12/13 604 626 .. 1 24 [] 29.8 8.8e-06 PF00096.16.fs 13/13 632 654 .. 1 24 [] 38.0 3e-08 PF00096.16.ls 13/13 632 654 .. 1 24 [] 40.0 7.6e-09 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 107 to 147: score 91.8, E = 1.8e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF DVaV Ft+EEW++Ld aQr+LY++VMlEN++ LvSlg KIAA0412 107 VTFDDVAVTFTKEEWGQLDLAQRTLYQEVMLENCGLLVSLG 147 PF01352.17.ls: domain 1 of 1, from 107 to 147: score 93.8, E = 4.7e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF DVaV Ft+EEW++Ld aQr+LY++VMlEN++ LvSlg KIAA0412 107 VTFDDVAVTFTKEEWGQLDLAQRTLYQEVMLENCGLLVSLG 147 PF00096.16.ls: domain 1 of 13, from 296 to 318: score 29.6, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+ k+ L H ++H KIAA0412 296 FKCS-ECGKVFNKKHLLAGHEKIH 318 PF00096.16.fs: domain 1 of 13, from 296 to 318: score 27.6, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+ k+ L H ++H KIAA0412 296 FKCS-ECGKVFNKKHLLAGHEKIH 318 PF00096.16.ls: domain 2 of 13, from 324 to 346: score 28.4, E = 2.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + +L +H ++H KIAA0412 324 YECT-ECGKTFIKSTHLLQHHMIH 346 PF00096.16.fs: domain 2 of 13, from 324 to 346: score 26.5, E = 2.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + +L +H ++H KIAA0412 324 YECT-ECGKTFIKSTHLLQHHMIH 346 PF00096.16.ls: domain 3 of 13, from 352 to 374: score 36.7, E = 7.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+rks L++H+r+H KIAA0412 352 YECM-ECGKAFNRKSYLTQHQRIH 374 PF00096.16.fs: domain 3 of 13, from 352 to 374: score 34.7, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+rks L++H+r+H KIAA0412 352 YECM-ECGKAFNRKSYLTQHQRIH 374 PF00096.16.ls: domain 4 of 13, from 380 to 402: score 31.6, E = 2.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++sn+ H r+H KIAA0412 380 YKCN-ECGKAFTHRSNFVLHNRRH 402 PF00096.16.fs: domain 4 of 13, from 380 to 402: score 29.7, E = 3.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++sn+ H r+H KIAA0412 380 YKCN-ECGKAFTHRSNFVLHNRRH 402 PF00096.16.ls: domain 5 of 13, from 408 to 430: score 25.8, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++F+++ + rH +H KIAA0412 408 FVCT-ECGQVFRHRPGFLRHYVVH 430 PF00096.16.fs: domain 5 of 13, from 408 to 430: score 23.9, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++F+++ + rH +H KIAA0412 408 FVCT-ECGQVFRHRPGFLRHYVVH 430 PF00096.16.ls: domain 6 of 13, from 436 to 458: score 33.3, E = 7.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++s L H++tH KIAA0412 436 YECL-ECGKVFKHRSYLMWHQQTH 458 PF00096.16.fs: domain 6 of 13, from 436 to 458: score 31.4, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++s L H++tH KIAA0412 436 YECL-ECGKVFKHRSYLMWHQQTH 458 PF00096.16.ls: domain 7 of 13, from 464 to 486: score 24.4, E = 0.00038 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++ L +H +H KIAA0412 464 YECS-ECGKVFLESAALIHHYVIH 486 PF00096.16.fs: domain 8 of 13, from 492 to 514: score 34.3, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F+++s LkrH+r+H KIAA0412 492 FECL-ECGKAFNHRSYLKRHQRIH 514 PF00096.16.ls: domain 8 of 13, from 492 to 514: score 36.3, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F+++s LkrH+r+H KIAA0412 492 FECL-ECGKAFNHRSYLKRHQRIH 514 PF00096.16.fs: domain 9 of 13, from 520 to 542: score 26.2, E = 2.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F++ s++ H+r H KIAA0412 520 FVCS-ECGKAFTHCSTFILHKRAH 542 PF00096.16.ls: domain 9 of 13, from 520 to 542: score 28.2, E = 2.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F++ s++ H+r H KIAA0412 520 FVCS-ECGKAFTHCSTFILHKRAH 542 PF00096.16.ls: domain 10 of 13, from 548 to 570: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs++++L rH +H KIAA0412 548 FECK-ECGKAFSNRKDLIRHFSIH 570 PF00096.16.fs: domain 10 of 13, from 548 to 570: score 30.2, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs++++L rH +H KIAA0412 548 FECK-ECGKAFSNRKDLIRHFSIH 570 PF00096.16.ls: domain 11 of 13, from 576 to 598: score 35.9, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+r s L+rH+r+H KIAA0412 576 YECV-ECGKAFTRMSGLTRHKRIH 598 PF00096.16.fs: domain 11 of 13, from 576 to 598: score 33.9, E = 3.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+r s L+rH+r+H KIAA0412 576 YECV-ECGKAFTRMSGLTRHKRIH 598 PF00096.16.fs: domain 12 of 13, from 604 to 626: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+ + nL rH +H KIAA0412 604 YECV-ECGKSFCWSTNLIRHAIIH 626 PF00096.16.ls: domain 12 of 13, from 604 to 626: score 29.8, E = 8.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+ + nL rH +H KIAA0412 604 YECV-ECGKSFCWSTNLIRHAIIH 626 PF00096.16.fs: domain 13 of 13, from 632 to 654: score 38.0, E = 3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr+s+L++H+r+H KIAA0412 632 YKCS-ECGKAFSRSSSLTQHQRMH 654 PF00096.16.ls: domain 13 of 13, from 632 to 654: score 40.0, E = 7.6e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr+s+L++H+r+H KIAA0412 632 YKCS-ECGKAFSRSSSLTQHQRMH 654 //