hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02122031/chunk_1/iprscan-20080502-02122031.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0409 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05148.5.ls Hypothetical methyltransferase 573.3 2.2e-169 1 PF05148.5.fs Hypothetical methyltransferase 571.3 8.5e-169 1 PF08241.2.fs Methyltransferase domain 35.0 8.4e-09 1 PF08241.2.ls Methyltransferase domain 36.8 7.1e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05148.5.fs 1/1 245 464 .] 1 236 [] 571.3 8.5e-169 PF05148.5.ls 1/1 245 464 .] 1 236 [] 573.3 2.2e-169 PF08241.2.fs 1/1 321 398 .. 1 99 [] 35.0 8.4e-09 PF08241.2.ls 1/1 321 398 .. 1 99 [] 36.8 7.1e-08 Alignments of top-scoring domains: PF05148.5.fs: domain 1 of 1, from 245 to 464: score 571.3, E = 8.5e-169 *->dLeakmkkrLdGGrFRyLNEqLYsgtSskAedLFkEDPeAFdlYHaG +L+a+m++rLdG+rFRyLNEqLYsg+Ss+A++LF+EDPeAF+lYH+G KIAA0409 245 ALRARMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRG 291 FrsQVkKWPvnPLdrIIrkLkiRFEHsnAkkpknlvIaDlGCGEAkiAst F+sQVkKWP++P+drI+r+L+ ++p++lv+aD+GCG++++A KIAA0409 292 FQSQVKKWPLQPVDRIARDLR--------QRPASLVVADFGCGDCRLA-- 331 esvrekekVhSfDLvAvnedViaCDmRakvPLeDeSvDVAVyCLSLMGTn +s+r++ Vh+fDL++++++V++CDm a+vPLeDeSvDVAV+CLSLMGTn KIAA0409 332 SSIRNP--VHCFDLASLDPRVTVCDM-AQVPLEDESVDVAVFCLSLMGTN 378 ladFlkEAnRVLKvGGllyIAEVkSRFeDKsvreFvraltkLGFdveskd ++dFl+EAnRVLK+GGll++AEV+SRFe +vr+F+ra+tkLGF+++skd KIAA0409 379 IRDFLEEANRVLKPGGLLKVAEVSSRFE--DVRTFLRAVTKLGFKIVSKD 426 vankyFvLFeFkKveHvPkvgkKrelsglkLkPClYKKR<-* ++n++F+LF+F+K++ +P+vg+K++lsgl+L+PClYK+R KIAA0409 427 LTNSHFFLFDFQKTG-PPLVGPKAQLSGLQLQPCLYKRR 464 PF05148.5.ls: domain 1 of 1, from 245 to 464: score 573.3, E = 2.2e-169 *->dLeakmkkrLdGGrFRyLNEqLYsgtSskAedLFkEDPeAFdlYHaG +L+a+m++rLdG+rFRyLNEqLYsg+Ss+A++LF+EDPeAF+lYH+G KIAA0409 245 ALRARMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRG 291 FrsQVkKWPvnPLdrIIrkLkiRFEHsnAkkpknlvIaDlGCGEAkiAst F+sQVkKWP++P+drI+r+L+ ++p++lv+aD+GCG++++A KIAA0409 292 FQSQVKKWPLQPVDRIARDLR--------QRPASLVVADFGCGDCRLA-- 331 esvrekekVhSfDLvAvnedViaCDmRakvPLeDeSvDVAVyCLSLMGTn +s+r++ Vh+fDL++++++V++CDm a+vPLeDeSvDVAV+CLSLMGTn KIAA0409 332 SSIRNP--VHCFDLASLDPRVTVCDM-AQVPLEDESVDVAVFCLSLMGTN 378 ladFlkEAnRVLKvGGllyIAEVkSRFeDKsvreFvraltkLGFdveskd ++dFl+EAnRVLK+GGll++AEV+SRFe +vr+F+ra+tkLGF+++skd KIAA0409 379 IRDFLEEANRVLKPGGLLKVAEVSSRFE--DVRTFLRAVTKLGFKIVSKD 426 vankyFvLFeFkKveHvPkvgkKrelsglkLkPClYKKR<-* ++n++F+LF+F+K++ +P+vg+K++lsgl+L+PClYK+R KIAA0409 427 LTNSHFFLFDFQKTG-PPLVGPKAQLSGLQLQPCLYKRR 464 PF08241.2.fs: domain 1 of 1, from 321 to 398: score 35.0, E = 8.4e-09 *->LDvGcGtGllaraLarrvgpgarvtGvDlspemlalArerapragle D+GcG +la ++ v++ Dl + KIAA0409 321 ADFGCGDCRLASSIRNP------VHCFDLASLDPR------------ 349 nfvvgDaedLPfpDesFDlVvsslvlhhlaedperalrEiaRVLKPGGkl + v+D+ + P++Des+D++v l+l+ +++++l+E+ RVLKPGG+l KIAA0409 350 -VTVCDMAQVPLEDESVDVAVFCLSLMGT--NIRDFLEEANRVLKPGGLL 396 vi<-* + KIAA0409 397 KV 398 PF08241.2.ls: domain 1 of 1, from 321 to 398: score 36.8, E = 7.1e-08 *->LDvGcGtGllaraLarrvgpgarvtGvDlspemlalArerapragle D+GcG +la ++ v++ Dl + KIAA0409 321 ADFGCGDCRLASSIRNP------VHCFDLASLDPR------------ 349 nfvvgDaedLPfpDesFDlVvsslvlhhlaedperalrEiaRVLKPGGkl + v+D+ + P++Des+D++v l+l+ +++++l+E+ RVLKPGG+l KIAA0409 350 -VTVCDMAQVPLEDESVDVAVFCLSLMGT--NIRDFLEEANRVLKPGGLL 396 vi<-* + KIAA0409 397 KV 398 //