hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02051976/chunk_1/iprscan-20080502-02051976.nocrc
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Query sequence: KIAA0405
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  97.4    1.7e-24   7
SM00082                                                  41.0    1.6e-07   1
SM00013                                                  30.7    0.00021   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00013     1/1      81   113 ..     1    38 []    30.7  0.00021
SM00369     1/7     153   177 ..     1    24 []    11.8       15
SM00369     2/7     178   203 ..     1    24 []    15.7      5.1
SM00369     3/7     205   227 ..     1    24 []     5.9       80
SM00369     4/7     228   248 ..     1    24 []     5.8       81
SM00369     5/7     249   274 ..     1    24 []    13.9      8.3
SM00369     6/7     298   320 ..     1    24 []    14.8      6.5
SM00369     7/7     321   344 ..     1    24 []    29.5  0.00045
SM00082     1/1     356   407 ..     1    55 []    41.0  1.6e-07

Alignments of top-scoring domains:
SM00013: domain 1 of 1, from 81 to 113: score 30.7, E = 0.00021
                   *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-*
                      +CP  C+C       V+C +r+Lt  +vPl++P+ +t    
    KIAA0405    81    ACPSVCRCD---RNFVYCNERSLT--SVPLGIPEGVTV    113  

SM00369: domain 1 of 7, from 153 to 177: score 11.8, E = 15
                   *->LpnL.reLdLsnNqLtsLPpgaFqg<-*
                      Lp+  r+L+L+ N+++++ + a++    
    KIAA0405   153    LPKNvRVLHLQENNIQTISRAALAQ    177  

SM00369: domain 2 of 7, from 178 to 203: score 15.7, E = 5.1
                   *->LpnLreLdLsnNqLtsLP..pgaFqg<-*
                      L +L+eL+L++N ++++  ++gaF+    
    KIAA0405   178    LLKLEELHLDDNSISTVGveDGAFRE    203  

SM00369: domain 3 of 7, from 205 to 227: score 5.9, E = 80
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                        +L+ L Ls N+L+s+P g+  +   
    KIAA0405   205    -ISLKLLFLSKNHLSSVPVGLPVD    227  

SM00369: domain 4 of 7, from 228 to 248: score 5.8, E = 81
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                         L+eL+ + N++  + + aFq+   
    KIAA0405   228    ---LQELRVDENRIAVISDMAFQN    248  

SM00369: domain 5 of 7, from 249 to 274: score 13.9, E = 8.3
                   *->LpnLreLdLsnNqL..tsLPpgaFqg<-*
                      L++L++L  ++N L+++ + +g+F++   
    KIAA0405   249    LTSLERLIVDGNLLtnKGIAEGTFSH    274  

SM00369: domain 6 of 7, from 298 to 320: score 14.8, E = 6.5
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       ++L +L+L++Nq+ ++P  aF++   
    KIAA0405   298    -THLIRLYLQDNQINHIPLTAFSN    320  

SM00369: domain 7 of 7, from 321 to 344: score 29.5, E = 0.00045
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++Ld snNqL+ L +g+F++   
    KIAA0405   321    LRKLERLDISNNQLRMLTQGVFDN    344  

SM00082: domain 1 of 1, from 356 to 407: score 41.0, E = 1.6e-07
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NP+ CDC+++w  +wl+   ++ l+ +    +C +Pe++rG+ +++l
    KIAA0405   356    NPWFCDCSIKWVTEWLKY-IPSSLNVR--GFMCQGPEQVRGMAVREL 399  

                   lpsefsCp<-*
                   ++   sCp   
    KIAA0405   400 NMNLLSCP    407  

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