hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02051976/chunk_1/iprscan-20080502-02051976.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0405 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 105.8 1.2e-28 10 PF00560.23.fs Leucine Rich Repeat 87.3 4.2e-23 10 PF01462.9.fs Leucine rich repeat N-terminal domain 29.4 4.8e-08 3 PF01463.14.fs Leucine rich repeat C-terminal domain 22.7 3.8e-06 1 PF01462.9.ls Leucine rich repeat N-terminal domain 30.6 5.1e-06 1 PF00041.11.fs Fibronectin type III domain 21.1 1.9e-05 1 PF01463.14.ls Leucine rich repeat C-terminal domain 24.7 0.00031 1 PF00041.11.ls Fibronectin type III domain 19.5 0.0017 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01462.9.ls 1/1 81 108 .. 1 34 [] 30.6 5.1e-06 PF01462.9.fs 1/3 81 108 .. 1 34 [] 28.8 7.7e-08 PF00560.23.ls 1/10 110 133 .. 1 24 [] 7.8 9.4 PF00560.23.ls 3/10 156 178 .. 1 24 [] 11.7 1.7 PF00560.23.ls 4/10 180 204 .. 1 24 [] 11.0 2.3 PF00560.23.ls 5/10 206 224 .. 1 24 [] 10.6 2.8 PF00560.23.ls 6/10 227 249 .. 1 24 [] 8.6 6.4 PF00560.23.ls 7/10 251 275 .. 1 24 [] 11.8 1.6 PF00560.23.ls 8/10 277 298 .. 1 24 [] 7.7 9.5 PF00560.23.ls 9/10 299 321 .. 1 24 [] 14.3 0.41 PF00560.23.fs 9/10 299 321 .. 1 24 [] 12.4 0.024 PF00560.23.ls 10/10 323 345 .. 1 24 [] 16.3 0.1 PF00560.23.fs 10/10 323 345 .. 1 24 [] 14.4 0.0068 PF01463.14.ls 1/1 382 407 .. 1 26 [] 24.7 0.00031 PF01463.14.fs 1/1 382 407 .. 1 26 [] 22.7 3.8e-06 PF00041.11.ls 1/1 466 548 .. 1 84 [] 19.5 0.0017 Alignments of top-scoring domains: PF01462.9.ls: domain 1 of 1, from 81 to 108: score 30.6, E = 5.1e-06 *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-* aCp C+C V+C +r+Lt +vP ++P KIAA0405 81 ACPSVCRCD-----RNFVYCNERSLT-SVPLGIP 108 PF01462.9.fs: domain 1 of 3, from 81 to 108: score 28.8, E = 7.7e-08 *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-* aCp C+C V+C +r+Lt +vP ++P KIAA0405 81 ACPSVCRCD-----RNFVYCNERSLT-SVPLGIP 108 PF00560.23.ls: domain 1 of 10, from 110 to 133: score 7.8, E = 9.4 *->nLeeLdLsgCNpsltgs..lpssl.nl<-* +++L+L++ N +++ ++++p++l+n KIAA0405 110 GVTVLYLHN-N-QIN-NagFPAELhNV 133 PF00560.23.ls: domain 3 of 10, from 156 to 178: score 11.7, E = 1.7 *->nLeeLdLsgCNpsltgslpss.l.nl<-* n+++L+L+ N +++ +++ +l l KIAA0405 156 NVRVLHLQE-N-NIQ-TISRAaLaQL 178 PF00560.23.ls: domain 4 of 10, from 180 to 204: score 11.0, E = 2.3 *->nLeeLdLsgCNpsltgs..lpss.l.nl<-* +LeeL+L++ N s++ + ++++++++ KIAA0405 180 KLEELHLDD-N-SIS-TvgVEDGaFrEA 204 PF00560.23.ls: domain 5 of 10, from 206 to 224: score 10.6, E = 2.8 *->nLeeLdLsgCNpsltgslpsslnl<-* +L+ L Ls N +l+ s+p+ +l KIAA0405 206 SLKLLFLSK-N-HLS-SVPV--GL 224 PF00560.23.ls: domain 6 of 10, from 227 to 249: score 8.6, E = 6.4 *->nLeeLdLsgCNpsltgslpss.l.nl<-* L+eL+++ N ++ +++ +++nl KIAA0405 227 DLQELRVDE-N-RIA-VISDMaFqNL 249 PF00560.23.ls: domain 7 of 10, from 251 to 275: score 11.8, E = 1.6 *->nLeeLdLsgCNpsltgs..lpss.l.nl<-* +Le L ++g N lt +++++++++++l KIAA0405 251 SLERLIVDG-N-LLT-NkgIAEGtFsHL 275 PF00560.23.ls: domain 8 of 10, from 277 to 298: score 7.7, E = 9.5 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+e ++ + N sl+ + p++l++ KIAA0405 277 KLKEFSIVR-N-SLS-HPPPDLpGT 298 PF00560.23.ls: domain 9 of 10, from 299 to 321: score 14.3, E = 0.41 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L L+L++ N +++ ++p +++nl KIAA0405 299 HLIRLYLQD-N-QIN-HIPLTaFsNL 321 PF00560.23.fs: domain 9 of 10, from 299 to 321: score 12.4, E = 0.024 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L L+L++ N +++ ++p +++nl KIAA0405 299 HLIRLYLQD-N-QIN-HIPLTaFsNL 321 PF00560.23.ls: domain 10 of 10, from 323 to 345: score 16.3, E = 0.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le Ld+s+ N +l + l + ++nl KIAA0405 323 KLERLDISN-N-QL-RMLTQGvFdNL 345 PF00560.23.fs: domain 10 of 10, from 323 to 345: score 14.4, E = 0.0068 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le Ld+s+ N +l + l + ++nl KIAA0405 323 KLERLDISN-N-QL-RMLTQGvFdNL 345 PF01463.14.ls: domain 1 of 1, from 382 to 407: score 24.7, E = 0.00031 *->dlrCasPeslrGqplldlppsdfsCp<-* +C++Pe++rG+ +++l++ +sCp KIAA0405 382 GFMCQGPEQVRGMAVRELNMNLLSCP 407 PF01463.14.fs: domain 1 of 1, from 382 to 407: score 22.7, E = 3.8e-06 *->dlrCasPeslrGqplldlppsdfsCp<-* +C++Pe++rG+ +++l++ +sCp KIAA0405 382 GFMCQGPEQVRGMAVRELNMNLLSCP 407 PF00041.11.ls: domain 1 of 1, from 466 to 548: score 19.5, E = 0.0017 *->P.saPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge. P s+ +l++ v++ts+++sW + ++ Y++t+ + +++ KIAA0405 466 PiSERIQLSIHFVNDTSIQVSWLSLF---TVMAYKLTW-VKMGHSLv 508 ...wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* ++ ++e++v+g + + l +L+P ++Y ++++ +++ + KIAA0405 509 ggiVQERIVSGEKQHLSLVNLEPRSTYRICLVPLDAF--NYR 548 //