hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01554742/chunk_1/iprscan-20080502-01554742.nocrc
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Query sequence: KIAA0400
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00105                                                 112.4    5.1e-29   1
SM00233                                                  77.5    1.7e-18   1
SM00326                                                  72.0    7.4e-17   1
SM00248                                                  52.4    5.7e-11   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1     322   415 ..     1    82 []    77.5  1.7e-18
SM00105     1/1     437   557 ..     1   139 []   112.4  5.1e-29
SM00248     1/3     600   632 ..     1    30 []    18.3      1.1
SM00248     2/3     636   665 ..     1    30 []    32.2  6.9e-05
SM00248     3/3     669   699 ..     1    30 []     1.9  2.6e+03
SM00326     1/1     963  1021 ..     1    58 []    72.0  7.4e-17

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 322 to 415: score 77.5, E = 1.7e-18
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk..kpkgsipLs
                      +++ G L+kks++ ++ w+kr + ++ng+L++ +   ++p  +++L 
    KIAA0400   322    TERNGSLYKKSdgiRkVWQKRKCSVKNGFLTISHGTanRPPAKLNLL 368  

                   gcsvre.p....cFeivt.drtlllqAeseeereeWvealqsaiaka<-*
                   +c+v+ +p++++cF ++++drt+++qAe+e+e++ W++ lq+  ++a   
    KIAA0400   369 TCQVKTnPeekkCFDLIShDRTYHFQAEDEQECQIWMSVLQNSKEEA    415  

SM00105: domain 1 of 1, from 437 to 557: score 112.4, E = 5.1e-29
                   *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs
                      +e + ++++++ gN +C+DCGa p+PtW S nlG++ CieCSGiHR 
    KIAA0400   437    KEIISEVQRMT-GNDVCCDCGA-PDPTWLSTNLGILTCIECSGIHRE 481  

                   LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl
                   L GvH S+    SltLD     eL l +  ++GN ++n++ e  l+ +++
    KIAA0400   482 L-GVHYSRM--QSLTLDVLGTSELLLAK--NIGNAGFNEIMECCLPAEDS 526  

                   kpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-*
                    +++++        +d   ++ +i aKY+e++    ++++ +   
    KIAA0400   527 VKPNPG--------SDMNARKDYITAKYIERRY---ARKKHA    557  

SM00248: domain 1 of 3, from 600 to 632: score 18.3, E = 1.1
                   *->dGrTpLHlAaen...gnlevvklLldkgadina<-*
                       + T+LHlA+++ ++ +l++v +L+++++++++   
    KIAA0400   600    PDETALHLAVRSvdrTSLHIVDFLVQNSGNLDK    632  

SM00248: domain 2 of 3, from 636 to 665: score 32.2, E = 6.9e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G T+LH+++ ++n e++klLl+ +a+i++   
    KIAA0400   636    KGSTALHYCCLTDNAECLKLLLRGKASIEI    665  

SM00248: domain 3 of 3, from 669 to 699: score 1.9, E = 2.6e+03
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                       G TpL +A + +++++ +lL ++  + +n    
    KIAA0400   669    SGETPLDIAKRLKHEHCEELLTQALSgRFNS    699  

SM00326: domain 1 of 1, from 963 to 1021: score 72.0, E = 7.4e-17
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnr.tGke
                      ++v+AlY++ a+n+dEL+F++GD+i+v  ++d++Ww G ++++ G++
    KIAA0400   963    KRVKALYNCVADNPDELTFSEGDVIIVDGEEDQEWWIGHIDGdPGRK 1009 

                   GlfPsnYVeeie<-*
                   G fP ++V  i    
    KIAA0400  1010 GAFPVSFVHFIA    1021 

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