hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01532297/chunk_1/iprscan-20080502-01532297.nocrc
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Query sequence: KIAA0399
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00569.8.ls Zinc finger, ZZ type                            63.6    5.9e-16   2
PF00569.8.fs Zinc finger, ZZ type                            58.5    1.9e-15   2
PF03256.7.ls Anaphase-promoting complex, subunit 10 (APC1   -43.1    1.8e-05   1
PF00036.22.fs EF hand                                         23.6    2.2e-05   1
PF00036.22.ls EF hand                                         25.6    0.00017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00036.22.fs   1/1     136   164 ..     1    29 []    23.6  2.2e-05
PF00036.22.ls   1/1     136   164 ..     1    29 []    25.6  0.00017
PF03256.7.ls   1/1     253   418 ..     1   222 []   -43.1  1.8e-05
PF00569.8.ls   1/2    1798  1846 ..     1    46 []    29.6    1e-05
PF00569.8.fs   1/2    1803  1846 ..     6    46 .]    26.4  1.6e-06
PF00569.8.fs   2/2    1847  1891 ..     1    46 []    32.1  4.2e-08
PF00569.8.ls   2/2    1847  1891 ..     1    46 []    34.0  4.7e-07

Alignments of top-scoring domains:
PF00036.22.fs: domain 1 of 1, from 136 to 164: score 23.6, E = 2.2e-05
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      +++eaF++fD+ gDG+++ e +++alk+    
    KIAA0399   136    QFEEAFAQFDAEGDGTVDAENMLEALKNS    164  

PF00036.22.ls: domain 1 of 1, from 136 to 164: score 25.6, E = 0.00017
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      +++eaF++fD+ gDG+++ e +++alk+    
    KIAA0399   136    QFEEAFAQFDAEGDGTVDAENMLEALKNS    164  

PF03256.7.ls: domain 1 of 1, from 253 to 418: score -43.1, E = 1.8e-05
                   *->itanatpssrgdlsqkeleGfaevlsqrvreigelAvWslSScKpGn
                      ++++ ++ s +  + k+ + +              A +  SS     
    KIAA0399   253    ESPGDLTRSPEMDKLKSVAKC-------------YAYIETSSNSA-- 284  

                   gVlfllRDdnldT..yWQSDGsqP.HlvnIqFsKktdIkyvaiYldyklD
                    ++  +   n +T++yWQSDGs  +H ++ +    + +  ++i +  + D
    KIAA0399   285 DID-KM--TNGETssYWQSDGSACsHWIRLKMKPDVVLRHLSIAVA-ATD 330  

                   ESYtPskirVraGtgfnDlqevktleveeGQPtGWVhIplredAGDDGDD
                   +SY P+ + V +G + +Dlqev+ + +    +tG   ++l+         
    KIAA0399   331 QSYMPQQVTVAVGRNASDLQEVRDVHIPS-NVTG--YVTLL--------- 368  

                   VEGGGPNDGGDgreDDkllrvfmlQiavlaNHqnGrDthvRqIriYgPvi
                              + +    +     Qi +     +G Dt     ri+g + 
    KIAA0399   369 ----------ENAN----VSQLYVQINIKRCLSDGCDT-----RIHGLRA 399  

                   ershvphqlfhgNHATptsvdfqtyatl<-*
                       v  q   +     + v +  ++++   
    KIAA0399   400 ----VGFQRVKK-----SGVSVSDASAI    418  

PF00569.8.ls: domain 1 of 2, from 1798 to 1846: score 29.6, E = 1e-05
                   *->ihkvytCdgCkeapiigv.RYhClrCsdYDLCqsCfstGhk....ag
                           +CdgC e  i++ +RY+Cl+Csd DLC  Cf+ G k+++++ 
    KIAA0399  1798    LNVDISCDGCDE--IAPWhRYRCLQCSDMDLCKTCFLGGVKpeghGD 1842 

                   kHkm<-*
                   +H+m   
    KIAA0399  1843 DHEM    1846 

PF00569.8.fs: domain 1 of 2, from 1803 to 1846: score 26.4, E = 1.6e-06
                   *->tCdgCkeapiigv.RYhClrCsdYDLCqsCfstGhk....agkHkm<
                      +CdgC e  i++ +RY+Cl+Csd DLC  Cf+ G k+++++ +H+m 
    KIAA0399  1803    SCDGCDE--IAPWhRYRCLQCSDMDLCKTCFLGGVKpeghGDDHEM  1846 

                   -*
                     
    KIAA0399     -    -    

PF00569.8.fs: domain 2 of 2, from 1847 to 1891: score 32.1, E = 4.2e-08
                   *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm<
                        +++tCd C    iig R  C +C+d+DLC +C+ + +++ +H++ 
    KIAA0399  1847    VNMEFTCDHCQG-LIIGRRMNCNVCDDFDLCYGCYAAKKYSYGHLP  1891 

                   -*
                     
    KIAA0399     -    -    

PF00569.8.ls: domain 2 of 2, from 1847 to 1891: score 34.0, E = 4.7e-07
                   *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm<
                        +++tCd C    iig R  C +C+d+DLC +C+ + +++ +H++ 
    KIAA0399  1847    VNMEFTCDHCQG-LIIGRRMNCNVCDDFDLCYGCYAAKKYSYGHLP  1891 

                   -*
                     
    KIAA0399     -    -    

//