# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg00651s2.fasta.huge -Q ../query/KIAA0399.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0399, 2982 aa vs ./tmplib.23147 library 1984523 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.2251+/-0.00623; mu= 9.9482+/- 0.422 mean_var=180.5743+/-43.687, 0's: 0 Z-trim: 3 B-trim: 79 in 1/39 Lambda= 0.095443 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 45, opt: 33, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0076 ( 1701 res) ha00936 (1701) 326 59.2 1.5e-08 KIAA0708 ( 1753 res) hh01062b(revised) (1753) 309 56.9 7.9e-08 >>KIAA0076 ( 1701 res) ha00936 (1701 aa) initn: 344 init1: 310 opt: 326 Z-score: 245.2 bits: 59.2 E(): 1.5e-08 Smith-Waterman score: 326; 42.424% identity (72.727% similar) in 132 aa overlap (272-401:842-971) 250 260 270 280 290 300 KIAA03 ESLDQLVQKEKESPGDLTRSPEMDKLKSVAKCYAYIETSSNSADIDKMTNGETSSYWQSD ::. .:.::: .:.:. . ..::.:. KIAA00 RRTHRPINIPFFDVFLRYLCQGSSVEVKEDKCWEKVEVSSNPHRASKLTDHNPKTYWESN 820 830 840 850 860 870 310 320 330 340 350 KIAA03 GSACSHWIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVAVGRNASDLQ-EVRDVHI-PS ::: ::.: :.:. ...:.:.. ::. :.:::: .:.: : ..:.:. :. .:.. :: KIAA00 GSAGSHYITLHMRRGILIRQLTLLVASEDSSYMPARVVVCGGDSTSSLHTELNSVNVMPS 880 890 900 910 920 930 360 370 380 390 400 410 KIAA03 NVTGYVTLLENANVSQLYVQINIKRCLSDGCDTRIHGLRAVGFQRVKKSGVSVSDASAIW .. : :::: . .:: :::: . : ::::.::. .: KIAA00 --ASRVILLENLTRFWPIIQIRIKRCQQGGIDTRIRGLEILGPKPTFWPVFREQLCRHTR 940 950 960 970 980 420 430 440 450 460 470 KIAA03 YWSLLTSLVTASMETNPAFVQTVLHNTQKALRHMPPLSLSPGSTDFSTFLSPNVLEEVDS KIAA00 LFYMVRAQAWSQDMAEDRRSLLHLSSRLNGALRQEQNFADRFLPDDEAAQALGKTCWEAL 990 1000 1010 1020 1030 1040 >>KIAA0708 ( 1753 res) hh01062b(revised) (1753 aa) initn: 295 init1: 295 opt: 309 Z-score: 232.4 bits: 56.9 E(): 7.9e-08 Smith-Waterman score: 309; 40.909% identity (71.212% similar) in 132 aa overlap (272-401:404-533) 250 260 270 280 290 300 KIAA03 ESLDQLVQKEKESPGDLTRSPEMDKLKSVAKCYAYIETSSNSADIDKMTNGETSSYWQSD ::. .:.::: .:.:. . ..::.:. KIAA07 RRTHQPINIPFFDVFLRHLCQGSSVEVKEDKCWEKVEVSSNPHRASKLTDHNPKTYWESN 380 390 400 410 420 430 310 320 330 340 350 KIAA03 GSACSHWIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVAVGRNASDL-QEVRDVHI-PS ::. ::.: :.:. :..:.:.. ::. :.:::: .:.: : ..: . :. :.. :: KIAA07 GSTGSHYITLHMHRGVLVRQLTLLVASEDSSYMPARVVVFGGDSTSCIGTELNTVNVMPS 440 450 460 470 480 490 360 370 380 390 400 410 KIAA03 NVTGYVTLLENANVSQLYVQINIKRCLSDGCDTRIHGLRAVGFQRVKKSGVSVSDASAIW .. : :::: : .:: :::: . : :::..:....: KIAA07 --ASRVILLENLNRFWPIIQIRIKRCQQGGIDTRVRGVEVLGPKPTFWPLFREQLCRRTC 500 510 520 530 540 550 420 430 440 450 460 470 KIAA03 YWSLLTSLVTASMETNPAFVQTVLHNTQKALRHMPPLSLSPGSTDFSTFLSPNVLEEVDS KIAA07 LFYTIRAQAWSRDIAEDHRRLLQLCPRLNRVLRHEQNFADRFLPDDEAAQALGKTCWEAL 560 570 580 590 600 610 2982 residues in 1 query sequences 1984523 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:19:59 2008 done: Thu Dec 18 15:20:00 2008 Total Scan time: 1.320 Total Display time: 0.200 Function used was FASTA [version 34.26.5 April 26, 2007]