hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01482108/chunk_1/iprscan-20080502-01482108.nocrc
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Query sequence: KIAA0396
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 185.7    4.3e-51   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/8      45    74 ..     1    30 []    24.8    0.012
SM00248    2/8      87   116 ..     1    30 []    34.8  1.2e-05
SM00248    3/8     120   149 ..     1    30 []    24.5    0.015
SM00248    4/8     153   182 ..     1    30 []    37.7  1.6e-06
SM00248    5/8     186   215 ..     1    30 []    22.2    0.075
SM00248    6/8     218   246 ..     1    30 []    21.5     0.12
SM00248    7/8     483   527 ..     1    30 []    15.5      7.4
SM00248    8/8     531   570 ..     1    30 []     4.8  1.1e+03

Alignments of top-scoring domains:
SM00248: domain 1 of 8, from 45 to 74: score 24.8, E = 0.012
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +  TpL +Aa+ng+ +vv+lLl++    +    
    KIAA0396    45    QRSTPLIIAARNGHAKVVRLLLEHYRVQTQ    74   

SM00248: domain 2 of 8, from 87 to 116: score 34.8, E = 1.2e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG T+L++Aa  g+ evvklL+++ga++n    
    KIAA0396    87    DGATALWCAAGAGHFEVVKLLVSHGANVNH    116  

SM00248: domain 3 of 8, from 120 to 149: score 24.5, E = 0.015
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       + TpL  A+  g+l++vk+L++++a+i +   
    KIAA0396   120    TNSTPLRAACFDGRLDIVKYLVENNANISI    149  

SM00248: domain 4 of 8, from 153 to 182: score 37.7, E = 1.6e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +++T+L++Aa++g+ +vv++Ll+  ad+na   
    KIAA0396   153    YDNTCLMIAAYKGHTDVVRYLLEQRADPNA    182  

SM00248: domain 5 of 8, from 186 to 215: score 22.2, E = 0.075
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G T+LH Aae g++++vk+L++  a i +   
    KIAA0396   186    CGATALHFAAEAGHIDIVKELIKWRAAIVV    215  

SM00248: domain 6 of 8, from 218 to 246: score 21.5, E = 0.12
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+TpL +Aae+   +vv+lLl++  d++    
    KIAA0396   218    HGMTPLKVAAESCKADVVELLLSHA-DCDR    246  

SM00248: domain 7 of 8, from 483 to 527: score 15.5, E = 7.4
                   *->dGrTpLHlAaen...............gnlevvklLldkgadina<-
                      +G+T LHlA+ ++++ ++ ++++  +  n  v klLld ga++na  
    KIAA0396   483    EGFTLLHLAVNSntpvddfhtndvcsfPNALVTKLLLDCGAEVNA   527  

                   *
                    
    KIAA0396     -   -    

SM00248: domain 8 of 8, from 531 to 570: score 4.8, E = 1.1e+03
                   *->dGrTpLHlAaen........gnlevvklLldkga..dina<-*
                      +G+++LH+ ++++++ ++    ++++  L+++ga++d++    
    KIAA0396   531    EGNSALHIIVQYnrpisdflTLHSIIISLVEAGAhtDMTN    570  

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