hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01482108/chunk_1/iprscan-20080502-01482108.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0396 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 231.2 2.1e-66 8 PF00023.20.fs Ankyrin repeat 222.4 9.6e-64 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/8 45 77 .. 1 33 [] 20.2 0.00012 PF00023.20.ls 1/8 45 77 .. 1 33 [] 22.2 0.0017 PF00023.20.ls 2/8 87 119 .. 1 33 [] 42.4 1.5e-09 PF00023.20.fs 2/8 87 119 .. 1 33 [] 40.4 2.8e-10 PF00023.20.ls 3/8 120 152 .. 1 33 [] 25.6 0.00017 PF00023.20.fs 3/8 120 152 .. 1 33 [] 23.6 1.4e-05 PF00023.20.ls 4/8 153 185 .. 1 33 [] 42.3 1.6e-09 PF00023.20.fs 4/8 153 185 .. 1 33 [] 40.3 3e-10 PF00023.20.ls 5/8 186 217 .. 1 33 [] 18.0 0.032 PF00023.20.fs 5/8 186 211 .. 1 26 [. 23.1 1.9e-05 PF00023.20.ls 6/8 218 249 .. 1 33 [] 23.3 0.00081 PF00023.20.fs 6/8 218 249 .. 1 33 [] 21.3 5.8e-05 PF00023.20.ls 7/8 483 530 .. 1 33 [] 40.0 7.4e-09 PF00023.20.fs 7/8 483 530 .. 1 33 [] 38.0 1.3e-09 PF00023.20.ls 8/8 531 571 .. 1 33 [] 17.5 0.045 PF00023.20.fs 8/8 531 571 .. 1 33 [] 15.5 0.0025 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 8, from 45 to 77: score 20.2, E = 0.00012 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL +Aa++g+++vv+lLl++ q+ KIAA0396 45 QRSTPLIIAARNGHAKVVRLLLEHYRVQTQQTG 77 PF00023.20.ls: domain 1 of 8, from 45 to 77: score 22.2, E = 0.0017 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL +Aa++g+++vv+lLl++ q+ KIAA0396 45 QRSTPLIIAARNGHAKVVRLLLEHYRVQTQQTG 77 PF00023.20.ls: domain 2 of 8, from 87 to 119: score 42.4, E = 1.5e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG T+L +Aa g+ evvklL+s+GA++n+++ KIAA0396 87 DGATALWCAAGAGHFEVVKLLVSHGANVNHTTV 119 PF00023.20.fs: domain 2 of 8, from 87 to 119: score 40.4, E = 2.8e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG T+L +Aa g+ evvklL+s+GA++n+++ KIAA0396 87 DGATALWCAAGAGHFEVVKLLVSHGANVNHTTV 119 PF00023.20.ls: domain 3 of 8, from 120 to 152: score 25.6, E = 0.00017 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL A++ g+l++vk+L+++ A++ + ++ KIAA0396 120 TNSTPLRAACFDGRLDIVKYLVENNANISIANK 152 PF00023.20.fs: domain 3 of 8, from 120 to 152: score 23.6, E = 1.4e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL A++ g+l++vk+L+++ A++ + ++ KIAA0396 120 TNSTPLRAACFDGRLDIVKYLVENNANISIANK 152 PF00023.20.ls: domain 4 of 8, from 153 to 185: score 42.3, E = 1.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+L++Aa++g+++vv++Ll+q Ad+na+ KIAA0396 153 YDNTCLMIAAYKGHTDVVRYLLEQRADPNAKAH 185 PF00023.20.fs: domain 4 of 8, from 153 to 185: score 40.3, E = 3e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+L++Aa++g+++vv++Ll+q Ad+na+ KIAA0396 153 YDNTCLMIAAYKGHTDVVRYLLEQRADPNAKAH 185 PF00023.20.ls: domain 5 of 8, from 186 to 217: score 18.0, E = 0.032 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G T+LH Aa+ g++++vk+L++ +++ KIAA0396 186 CGATALHFAAEAGHIDIVKELIK-WRAAIVVNG 217 PF00023.20.fs: domain 5 of 8, from 186 to 211: score 23.1, E = 1.9e-05 *->dGfTPLHlAalrgnlevvklLlsqGA<-* +G T+LH Aa+ g++++vk+L++ A KIAA0396 186 CGATALHFAAEAGHIDIVKELIKWRA 211 PF00023.20.ls: domain 6 of 8, from 218 to 249: score 23.3, E = 0.00081 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL +Aa++ ++vv+lLls Ad + + + KIAA0396 218 HGMTPLKVAAESCKADVVELLLS-HADCDRRSR 249 PF00023.20.fs: domain 6 of 8, from 218 to 249: score 21.3, E = 5.8e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL +Aa++ ++vv+lLls Ad + + + KIAA0396 218 HGMTPLKVAAESCKADVVELLLS-HADCDRRSR 249 PF00023.20.ls: domain 7 of 8, from 483 to 530: score 40.0, E = 7.4e-09 *->dGfTPLHlAalrg...............nlevvklLlsqGAdlnaqd +GfT LHlA+ ++ + ++ + ++ + +n+ v klLl++GA++na+d KIAA0396 483 EGFTLLHLAVNSNtpvddfhtndvcsfpNALVTKLLLDCGAEVNAVD 529 d<-* + KIAA0396 530 N 530 PF00023.20.fs: domain 7 of 8, from 483 to 530: score 38.0, E = 1.3e-09 *->dGfTPLHlAalrg...............nlevvklLlsqGAdlnaqd +GfT LHlA+ ++ + ++ + ++ + +n+ v klLl++GA++na+d KIAA0396 483 EGFTLLHLAVNSNtpvddfhtndvcsfpNALVTKLLLDCGAEVNAVD 529 d<-* + KIAA0396 530 N 530 PF00023.20.ls: domain 8 of 8, from 531 to 571: score 17.5, E = 0.045 *->dGfTPLHlAalrg........nlevvklLlsqGAdlnaqdd<-* +G+++LH+ ++++ + ++ ++++ L+++GA +++++ KIAA0396 531 EGNSALHIIVQYNrpisdfltLHSIIISLVEAGAHTDMTNK 571 PF00023.20.fs: domain 8 of 8, from 531 to 571: score 15.5, E = 0.0025 *->dGfTPLHlAalrg........nlevvklLlsqGAdlnaqdd<-* +G+++LH+ ++++ + ++ ++++ L+++GA +++++ KIAA0396 531 EGNSALHIIVQYNrpisdfltLHSIIISLVEAGAHTDMTNK 571 //