hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01464439/chunk_1/iprscan-20080502-01464439.nocrc
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Query sequence: KIAA0395
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00389                                                 177.0    1.8e-48   4
SM00355                                                  34.6    1.3e-05   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/2     124   147 ..     1    23 []    22.2    0.072
SM00355      2/2     156   179 ..     1    23 []    12.4       12
SM00389      1/4     351   413 ..     1    63 []    37.3  2.1e-06
SM00389      2/4     541   603 ..     1    63 []    53.9  2.1e-11
SM00389      3/4     660   721 ..     1    63 []    43.8  2.3e-08
SM00389      4/4     811   873 ..     1    63 []    42.1  7.6e-08

Alignments of top-scoring domains:
SM00355: domain 1 of 2, from 124 to 147: score 22.2, E = 0.072
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C+++ ++ ++++ Hm + H   
    KIAA0395   124    YSCKY-CDFRSHDMtQFVGHMNsEH    147  

SM00355: domain 2 of 2, from 156 to 179: score 12.4, E = 12
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C+  C++  ++++ L  H  + H   
    KIAA0395   156    FVCSG-CSFLAKTPeGLSLHNAtCH    179  

SM00389: domain 1 of 4, from 351 to 413: score 37.3, E = 2.1e-06
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +  + ++   +  ++L+++F+k pYP+++e+  L   ++ +e+q k+
    KIAA0395   351    SSIPTYNAAMDSNSFLKNSFHKFPYPTKAELCYLTVVTKYPEEQLKI 397  

                   WFQNRRakwkrqekkk<-*
                   WF  +R k+  ++ ++   
    KIAA0395   398 WFTAQRLKQGISWSPE    413  

SM00389: domain 2 of 4, from 541 to 603: score 53.9, E = 2.1e-11
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                         ++   + eQl++L+ +F +n++P  +e e+L k +gL+ r V+ 
    KIAA0395   541    ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRK 587  

                   WFQNRRakwkrqekkk<-*
                   WF+ RR+ +++ + ++   
    KIAA0395   588 WFSDRRYHCRNLKGSR    603  

SM00389: domain 3 of 4, from 660 to 721: score 43.8, E = 2.3e-08
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      + +++ +  peQl++LE +F++np P  ee+++L  e+++t+r +  
    KIAA0395   660    PTKYKER-APEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDS 705  

                   WFQNRRakwkrqekkk<-*
                   WF+ RR+k   +e kk   
    KIAA0395   706 WFSERRKKVNAEETKK    721  

SM00389: domain 4 of 4, from 811 to 873: score 42.1, E = 7.6e-08
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      + +  +  t +Q++ L++ F ++++Ps ++ + + +++gL++  V  
    KIAA0395   811    PGKVSCKKTAQQRHLLRQLFVQTQWPSNQDYDSIMAQTGLPRPEVVR 857  

                   WFQNRRakwkrqekkk<-*
                   WF   R+ +k+ + k+   
    KIAA0395   858 WFGDSRYALKNGQLKW    873  

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