hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01464439/chunk_1/iprscan-20080502-01464439.nocrc
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Query sequence: KIAA0395
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00046.19.fs Homeobox domain                                 65.2      2e-16   4
PF00046.19.ls Homeobox domain                                 41.9      2e-09   2
PF00096.16.ls Zinc finger, C2H2 type                          25.3    0.00021   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00046.19.ls   1/2     545   598 ..     1    57 []    30.9  2.7e-06
PF00046.19.fs   2/4     549   598 ..     8    57 .]    31.3  6.4e-07
PF00046.19.ls   2/2     663   713 ..     1    57 []    11.0  0.00033

Alignments of top-scoring domains:
PF00046.19.ls: domain 1 of 2, from 545 to 598: score 30.9, E = 2.7e-06
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      + k    ++eQl +L+  F +n+ P  +e e+L k +gL+ r V+ W
    KIAA0395   545    KNKK---SHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKW 588  

                   FQNRRaKwKk<-*
                   F  RR+ ++    
    KIAA0395   589 FSDRRYHCRN    598  

PF00046.19.fs: domain 2 of 4, from 549 to 598: score 31.3, E = 6.4e-07
                   *->tpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvWFQNRRaK
                      ++eQl +L+  F +n+ P  +e e+L k +gL+ r V+ WF  RR+ 
    KIAA0395   549    SHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYH 595  

                   wKk<-*
                   ++    
    KIAA0395   596 CRN    598  

PF00046.19.ls: domain 2 of 2, from 663 to 713: score 11.0, E = 0.00033
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                       + R    peQl++LE  F++n+ P  ee  +L  ++++t r +  W
    KIAA0395   663    YKER---APEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSW 706  

                   FQNRRaKwKk<-*
                   F  RR   Kk   
    KIAA0395   707 FSERR---KK    713  

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