hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01382423/chunk_1/iprscan-20080502-01382423.nocrc
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Query sequence: KIAA0390
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 243.7    1.5e-68  10

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/10    142   164 ..     1    23 []    25.8    0.006
SM00355      2/10    170   192 ..     1    23 []    28.4    0.001
SM00355      3/10    286   309 ..     1    23 []    24.8    0.012
SM00355      4/10    312   335 ..     1    23 []    22.7     0.05
SM00355      5/10    357   379 ..     1    23 []    29.6  0.00042
SM00355      6/10    385   407 ..     1    23 []    24.5    0.015
SM00355      7/10    643   665 ..     1    23 []    23.3    0.034
SM00355      8/10    763   785 ..     1    23 []    25.4   0.0081
SM00355      9/10    791   813 ..     1    23 []    25.3   0.0083
SM00355     10/10   1013  1036 ..     1    23 []    13.9      8.4

Alignments of top-scoring domains:
SM00355: domain 1 of 10, from 142 to 164: score 25.8, E = 0.006
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y Cp+ Cgk+f+  + L  Hmr+H   
    KIAA0390   142    YPCPL-CGKRFRFNsILSLHMRTH    164  

SM00355: domain 2 of 10, from 170 to 192: score 28.4, E = 0.001
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kCp+ C+ +  +k++Lk H+r+H   
    KIAA0390   170    FKCPY-CDHRAAQKgNLKIHLRTH    192  

SM00355: domain 3 of 10, from 286 to 309: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C+ +f+ +++L rH+r  H   
    KIAA0390   286    FRCTF-CKGKFKKReELDRHIRiLH    309  

SM00355: domain 4 of 10, from 312 to 335: score 22.7, E = 0.05
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ykC++ C++  s++++L+ H+ + H   
    KIAA0390   312    YKCTL-CDFAASQEeELISHVEkAH    335  

SM00355: domain 5 of 10, from 357 to 379: score 29.6, E = 0.00042
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg++fs++  Lk Hmr+H   
    KIAA0390   357    FRCEV-CGQVFSQAwFLKGHMRKH    379  

SM00355: domain 6 of 10, from 385 to 407: score 24.5, E = 0.015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i Cg++f+ +  Lk+Hm+vH   
    KIAA0390   385    HCCQI-CGRRFKEPwFLKNHMKVH    407  

SM00355: domain 7 of 10, from 643 to 665: score 23.3, E = 0.034
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +Cp  Cg++f+++++ + H rvH   
    KIAA0390   643    TECPD-CGRVFRTYhQVVVHSRVH    665  

SM00355: domain 8 of 10, from 763 to 785: score 25.4, E = 0.0081
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        Cp+ Cgk+f++ ++Lk H+r+H   
    KIAA0390   763    KDCPY-CGKTFRTShHLKVHLRIH    785  

SM00355: domain 9 of 10, from 791 to 813: score 25.3, E = 0.0083
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykCp+ C++  ++  +Lk H+ +H   
    KIAA0390   791    YKCPH-CDYAGTQSaSLKYHLERH    813  

SM00355: domain 10 of 10, from 1013 to 1036: score 13.9, E = 8.4
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C + C +++ss + +  H++  H   
    KIAA0390  1013    HGCLF-CAFTTSSMeLMALHLQaNH    1036 

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