hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01382423/chunk_1/iprscan-20080502-01382423.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0390 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 237.3 3.1e-68 10 PF00096.16.fs Zinc finger, C2H2 type 217.6 2.6e-62 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/10 142 164 .. 1 24 [] 26.9 1.9e-05 PF00096.16.ls 1/10 142 164 .. 1 24 [] 28.9 1.7e-05 PF00096.16.fs 2/10 170 192 .. 1 24 [] 27.5 1.3e-05 PF00096.16.ls 2/10 170 192 .. 1 24 [] 29.4 1.1e-05 PF00096.16.ls 3/10 286 309 .. 1 24 [] 23.3 0.00083 PF00096.16.ls 4/10 312 335 .. 1 24 [] 18.1 0.03 PF00096.16.fs 5/10 357 379 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 5/10 357 379 .. 1 24 [] 29.7 9.3e-06 PF00096.16.ls 6/10 385 407 .. 1 24 [] 23.9 0.00054 PF00096.16.ls 7/10 643 665 .. 1 24 [] 22.8 0.0011 PF00096.16.fs 8/10 763 785 .. 1 24 [] 28.0 1e-05 PF00096.16.ls 8/10 763 785 .. 1 24 [] 30.0 7.9e-06 PF00096.16.fs 9/10 791 813 .. 1 24 [] 23.2 0.00016 PF00096.16.ls 9/10 791 813 .. 1 24 [] 25.1 0.00023 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 10, from 142 to 164: score 26.9, E = 1.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp Cgk+F+ +s L H+rtH KIAA0390 142 YPCP-LCGKRFRFNSILSLHMRTH 164 PF00096.16.ls: domain 1 of 10, from 142 to 164: score 28.9, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp Cgk+F+ +s L H+rtH KIAA0390 142 YPCP-LCGKRFRFNSILSLHMRTH 164 PF00096.16.fs: domain 2 of 10, from 170 to 192: score 27.5, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C+ + +k+nLk HlrtH KIAA0390 170 FKCP-YCDHRAAQKGNLKIHLRTH 192 PF00096.16.ls: domain 2 of 10, from 170 to 192: score 29.4, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C+ + +k+nLk HlrtH KIAA0390 170 FKCP-YCDHRAAQKGNLKIHLRTH 192 PF00096.16.ls: domain 3 of 10, from 286 to 309: score 23.3, E = 0.00083 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ C+ +F+ +++L rH+r+ H KIAA0390 286 FRCT-FCKGKFKKREELDRHIRIlH 309 PF00096.16.ls: domain 4 of 10, from 312 to 335: score 18.1, E = 0.03 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ykC+ C+ + s+ ++L +H + H KIAA0390 312 YKCT-LCDFAASQEEELISHVEKaH 335 PF00096.16.fs: domain 5 of 10, from 357 to 379: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fs+ Lk H+r+H KIAA0390 357 FRCE-VCGQVFSQAWFLKGHMRKH 379 PF00096.16.ls: domain 5 of 10, from 357 to 379: score 29.7, E = 9.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fs+ Lk H+r+H KIAA0390 357 FRCE-VCGQVFSQAWFLKGHMRKH 379 PF00096.16.ls: domain 6 of 10, from 385 to 407: score 23.9, E = 0.00054 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg++F+ + Lk+H+++H KIAA0390 385 HCCQ-ICGRRFKEPWFLKNHMKVH 407 PF00096.16.ls: domain 7 of 10, from 643 to 665: score 22.8, E = 0.0011 *->ykCpfdCgksFsrksnLkrHlrtH<-* +Cp dCg++F++ ++ H r+H KIAA0390 643 TECP-DCGRVFRTYHQVVVHSRVH 665 PF00096.16.fs: domain 8 of 10, from 763 to 785: score 28.0, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* Cp +Cgk+F+++++Lk Hlr+H KIAA0390 763 KDCP-YCGKTFRTSHHLKVHLRIH 785 PF00096.16.ls: domain 8 of 10, from 763 to 785: score 30.0, E = 7.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* Cp +Cgk+F+++++Lk Hlr+H KIAA0390 763 KDCP-YCGKTFRTSHHLKVHLRIH 785 PF00096.16.fs: domain 9 of 10, from 791 to 813: score 23.2, E = 0.00016 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +C+++ +++++Lk Hl +H KIAA0390 791 YKCP-HCDYAGTQSASLKYHLERH 813 PF00096.16.ls: domain 9 of 10, from 791 to 813: score 25.1, E = 0.00023 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +C+++ +++++Lk Hl +H KIAA0390 791 YKCP-HCDYAGTQSASLKYHLERH 813 //