hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01063368/chunk_1/iprscan-20080502-01063368.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0371 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00064 118.0 1.1e-30 1 SM00404 26.0 0.00043 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00404 1/1 365 514 .. 1 92 [] 26.0 0.00043 SM00064 1/1 1116 1185 .. 1 81 [] 118.0 1.1e-30 Alignments of top-scoring domains: SM00404: domain 1 of 1, from 365 to 514: score 26.0, E = 0.00043 *->tvkhyhytgWpDhvekdsgvPe.dsileflravrk............ + ++ +t+ pD + + ++l+++ ++ + KIAA0371 365 QSLRLLCTQMPDP----GNWLSaLESTKWLHHLSVllksallvvhav 407 .....PivVHCSAGvGRTGtfvaidillqq.................... +++++P++VHCS+G++RT ++va+ ll ++ ++ ++ + + + + KIAA0371 408 dqdqrPVLVHCSDGWDRTPQIVALAKLLLDpyyrtiegfqvlvemewldf 457 ........................vdifdtvkelRsqRpgmvqteeQYlF +++ ++ ++++++++ +++ + + +d+v++l q p +++ +e +l KIAA0371 458 ghkfadrcghgensddlnercpvfLQWLDCVHQLQRQFPCSFEFNEAFLV 507 lyralle<-* + + KIAA0371 508 KLVQHTY 514 SM00064: domain 1 of 1, from 1116 to 1185: score 118.0, E = 1.1e-30 *->etaphWvpDeeasnClmnCgkeFtlvtrRrHHCRnCGrifCskCssk + ++W pD+ a +C ++C+ F+l ++R+HHCRnCG++fCs+C+++ KIAA0371 1116 TEMTRWLPDHLAAHC-YACDSAFWL-ASRKHHCRNCGNVFCSSCCNQ 1160 kaplpklgkekkngknedftpvRVCdsCyerlsk<-* k+p+p+++ ++ p RVC+sCy++l+ KIAA0371 1161 KVPVPSQQLFE---------PSRVCKSCYSSLHP 1185 //