hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01063368/chunk_1/iprscan-20080502-01063368.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0371 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06602.5.ls Myotubularin-related 270.0 4.4e-78 1 PF06602.5.fs Myotubularin-related 268.0 1.8e-77 1 PF01363.12.ls FYVE zinc finger 86.3 8.5e-23 1 PF01363.12.fs FYVE zinc finger 84.5 1.3e-22 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06602.5.fs 1/1 190 352 .. 1 123 [] 268.0 1.8e-77 PF06602.5.ls 1/1 190 352 .. 1 123 [] 270.0 4.4e-78 PF01363.12.fs 1/1 1119 1185 .. 1 77 [] 84.5 1.3e-22 PF01363.12.ls 1/1 1119 1185 .. 1 77 [] 86.3 8.5e-23 Alignments of top-scoring domains: PF06602.5.fs: domain 1 of 1, from 190 to 352: score 268.0, E = 1.8e-77 *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv Y+lC sYP++L+VP++i+D+eL+ v++FRs++R+P++++rHq+ngAv KIAA0371 190 YKLCGSYPQELIVPAWITDKELESVSSFRSWKRIPAVIYRHQSNGAV 236 IvRcSQPLvGfsgkRckeDEkllkailkanaiD................. I+Rc+QP+v+++g+R+++DE+l+++++ka+a+D+++++++ ++++++++ KIAA0371 237 IARCGQPEVSWWGWRNADDEHLVQSVAKACASDsrssgsklstrntsrdf 286 ......................e.kiqskklyIvDaRprtnAlaNrAkGG +++++ ++ + +++ ++ ++ ++ +iq++kl+I+DaR++++A+aNrAkGG KIAA0371 287 pnggdlsdvefdsslsnasgaeSlAIQPQKLLILDARSYAAAVANRAKGG 336 GyEneenYpnaelvfl<-* G+E+ e+Ypn+e+vf+ KIAA0371 337 GCECPEYYPNCEVVFM 352 PF06602.5.ls: domain 1 of 1, from 190 to 352: score 270.0, E = 4.4e-78 *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv Y+lC sYP++L+VP++i+D+eL+ v++FRs++R+P++++rHq+ngAv KIAA0371 190 YKLCGSYPQELIVPAWITDKELESVSSFRSWKRIPAVIYRHQSNGAV 236 IvRcSQPLvGfsgkRckeDEkllkailkanaiD................. I+Rc+QP+v+++g+R+++DE+l+++++ka+a+D+++++++ ++++++++ KIAA0371 237 IARCGQPEVSWWGWRNADDEHLVQSVAKACASDsrssgsklstrntsrdf 286 ......................e.kiqskklyIvDaRprtnAlaNrAkGG +++++ ++ + +++ ++ ++ ++ +iq++kl+I+DaR++++A+aNrAkGG KIAA0371 287 pnggdlsdvefdsslsnasgaeSlAIQPQKLLILDARSYAAAVANRAKGG 336 GyEneenYpnaelvfl<-* G+E+ e+Ypn+e+vf+ KIAA0371 337 GCECPEYYPNCEVVFM 352 PF01363.12.fs: domain 1 of 1, from 1119 to 1185: score 84.5, E = 1.3e-22 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll ++W+pD + +C+ C F l R+HHCR+CG++fC+sC++++v++ KIAA0371 1119 TRWLPDHLAAHCYACDSAFW-LASRKHHCRNCGNVFCSSCCNQKVPV 1164 pylgiaallkndviekpvRVCdsCydrlnk<-* p+++ + p RVC+sCy++l+ KIAA0371 1165 PSQQL---------FEPSRVCKSCYSSLHP 1185 PF01363.12.ls: domain 1 of 1, from 1119 to 1185: score 86.3, E = 8.5e-23 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll ++W+pD + +C+ C F l R+HHCR+CG++fC+sC++++v++ KIAA0371 1119 TRWLPDHLAAHCYACDSAFW-LASRKHHCRNCGNVFCSSCCNQKVPV 1164 pylgiaallkndviekpvRVCdsCydrlnk<-* p+++ + p RVC+sCy++l+ KIAA0371 1165 PSQQL---------FEPSRVCKSCYSSLHP 1185 //