hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00531908/chunk_1/iprscan-20080502-00531908.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0363 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01849.8.ls NAC domain 109.5 9.2e-30 1 PF01849.8.fs NAC domain 107.5 3.6e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01849.8.fs 1/1 1372 1431 .. 1 61 [] 107.5 3.6e-29 PF01849.8.ls 1/1 1372 1431 .. 1 61 [] 109.5 9.2e-30 Alignments of top-scoring domains: PF01849.8.fs: domain 1 of 1, from 1372 to 1431: score 107.5, E = 3.6e-29 *->kddKKlqsaLkKLglkqIpGveEVnifKkdgEiVihfnkPeVqkspa +++KK+++a++KLgl+qI+Gv++++i+K+++ i+++++kP+V+kspa KIAA0363 1372 RSEKKARKAMSKLGLRQIQGVTRITIQKSKN-ILFVIAKPDVFKSPA 1417 anTyvVtGeAkekn<-* ++TyvV+GeAk+++ KIAA0363 1418 SDTYVVFGEAKIED 1431 PF01849.8.ls: domain 1 of 1, from 1372 to 1431: score 109.5, E = 9.2e-30 *->kddKKlqsaLkKLglkqIpGveEVnifKkdgEiVihfnkPeVqkspa +++KK+++a++KLgl+qI+Gv++++i+K+++ i+++++kP+V+kspa KIAA0363 1372 RSEKKARKAMSKLGLRQIQGVTRITIQKSKN-ILFVIAKPDVFKSPA 1417 anTyvVtGeAkekn<-* ++TyvV+GeAk+++ KIAA0363 1418 SDTYVVFGEAKIED 1431 //