hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00482314/chunk_1/iprscan-20080502-00482314.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0360 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 168.3 7.4e-46 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/7 385 407 .. 1 23 [] 26.8 0.0031 SM00355 2/7 413 435 .. 1 23 [] 27.8 0.0015 SM00355 3/7 643 665 .. 1 23 [] 12.0 14 SM00355 4/7 671 693 .. 1 23 [] 27.4 0.0019 SM00355 5/7 703 725 .. 1 23 [] 28.7 0.00081 SM00355 6/7 923 945 .. 1 23 [] 25.9 0.0054 SM00355 7/7 952 975 .. 1 23 [] 19.7 0.4 Alignments of top-scoring domains: SM00355: domain 1 of 7, from 385 to 407: score 26.8, E = 0.0031 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + C k+f s +aL+ H+r+H KIAA0360 385 HKCRF-CAKVFGSDsALQIHLRSH 407 SM00355: domain 2 of 7, from 413 to 435: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cg +f+++++Lk H +H KIAA0360 413 YKCNV-CGNRFTTRgNLKVHFHRH 435 SM00355: domain 3 of 7, from 643 to 665: score 12.0, E = 14 *->ykCpigCgksfssk.aLkrHmrvH<-* +C i C ++ s ++aL+ H+ +H KIAA0360 643 NQCVI-CLRVLSCPrALRLHYGQH 665 SM00355: domain 4 of 7, from 671 to 693: score 27.4, E = 0.0019 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cg+ fs++++L+ H H KIAA0360 671 FKCKV-CGRAFSTRgNLRAHFVGH 693 SM00355: domain 5 of 7, from 703 to 725: score 28.7, E = 0.00081 *->ykCpigCgksfssk.aLkrHmrvH<-* Cpi C+k+f+++ L++H+r+H KIAA0360 703 NSCPI-CQKKFTNAvTLQQHVRMH 725 SM00355: domain 6 of 7, from 923 to 945: score 25.9, E = 0.0054 *->ykCpigCgksfssk.aLkrHmrvH<-* C++ Cg+ f+s+ aL++H+++H KIAA0360 923 KACEV-CGQAFPSQaALEEHQKTH 945 SM00355: domain 7 of 7, from 952 to 975: score 19.7, E = 0.4 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C + f + Lk+Hm H KIAA0360 952 FTCVF-CRQGFLERaTLKKHMLlAH 975 //