hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00482314/chunk_1/iprscan-20080502-00482314.nocrc
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Query sequence: KIAA0360
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         164.4    2.7e-46   8
PF00096.16.fs Zinc finger, C2H2 type                         148.6    1.5e-41   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   2/8     385   407 ..     1    24 []    23.6  0.00067
PF00096.16.fs   3/8     413   435 ..     1    24 []    25.3  4.7e-05
PF00096.16.ls   3/8     413   435 ..     1    24 []    27.2  5.2e-05
PF00096.16.ls   5/8     671   693 ..     1    24 []    30.0  7.7e-06
PF00096.16.fs   5/8     671   693 ..     1    24 []    28.0  9.7e-06
PF00096.16.fs   6/8     703   725 ..     1    24 []    24.5  7.5e-05
PF00096.16.ls   6/8     703   725 ..     1    24 []    26.4  9.1e-05
PF00096.16.fs   7/8     923   945 ..     1    24 []    23.8  0.00011
PF00096.16.ls   7/8     923   945 ..     1    24 []    25.8  0.00014
PF00096.16.ls   8/8     952   975 ..     1    24 []    19.1    0.014

Alignments of top-scoring domains:
PF00096.16.ls: domain 2 of 8, from 385 to 407: score 23.6, E = 0.00067
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC   C k+F + s L+ Hlr+H   
    KIAA0360   385    HKCR-FCAKVFGSDSALQIHLRSH    407  

PF00096.16.fs: domain 3 of 8, from 413 to 435: score 25.3, E = 4.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg +F++++nLk H  +H   
    KIAA0360   413    YKCN-VCGNRFTTRGNLKVHFHRH    435  

PF00096.16.ls: domain 3 of 8, from 413 to 435: score 27.2, E = 5.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg +F++++nLk H  +H   
    KIAA0360   413    YKCN-VCGNRFTTRGNLKVHFHRH    435  

PF00096.16.ls: domain 5 of 8, from 671 to 693: score 30.0, E = 7.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cg++Fs+++nL++H   H   
    KIAA0360   671    FKCK-VCGRAFSTRGNLRAHFVGH    693  

PF00096.16.fs: domain 5 of 8, from 671 to 693: score 28.0, E = 9.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cg++Fs+++nL++H   H   
    KIAA0360   671    FKCK-VCGRAFSTRGNLRAHFVGH    693  

PF00096.16.fs: domain 6 of 8, from 703 to 725: score 24.5, E = 7.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp +C+k+F++  +L++H r+H   
    KIAA0360   703    NSCP-ICQKKFTNAVTLQQHVRMH    725  

PF00096.16.ls: domain 6 of 8, from 703 to 725: score 26.4, E = 9.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp +C+k+F++  +L++H r+H   
    KIAA0360   703    NSCP-ICQKKFTNAVTLQQHVRMH    725  

PF00096.16.fs: domain 7 of 8, from 923 to 945: score 23.8, E = 0.00011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+ +Cg++F +++ L+ H++tH   
    KIAA0360   923    KACE-VCGQAFPSQAALEEHQKTH    945  

PF00096.16.ls: domain 7 of 8, from 923 to 945: score 25.8, E = 0.00014
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+ +Cg++F +++ L+ H++tH   
    KIAA0360   923    KACE-VCGQAFPSQAALEEHQKTH    945  

PF00096.16.ls: domain 8 of 8, from 952 to 975: score 19.1, E = 0.014
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C   C + F  +++Lk+H+   H   
    KIAA0360   952    FTCV-FCRQGFLERATLKKHMLLaH    975  

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