hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00445827/chunk_1/iprscan-20080502-00445827.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0358
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00799                                                 241.3    7.9e-68   1
SM00800                                                 103.9    1.8e-26   1
SM00801                                                  62.0    7.7e-14   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00800     1/1      11   101 ..     1   114 []   103.9  1.8e-26
SM00799     1/1     175   405 ..     1   204 []   241.3  7.9e-68
SM00801     1/1     488   558 ..     1    84 []    62.0  7.7e-14

Alignments of top-scoring domains:
SM00800: domain 1 of 1, from 11 to 101: score 103.9, E = 1.8e-26
                   *->pgrLfdyfvvvgldkskglepdelsalyqleapgrtGefqplgrsyk
                      ++rL+dy+v+vg+++++                         ++++ 
    KIAA0358    11    CPRLLDYLVIVGARHPS-----------------------SDSVAQT 34   

                   PeildryPekdfedfplpdsvpmFCFPeGidietwprstsspdpqfFsFV
                   Pe+l+ryP +d+ +fplp++v  FC+PeG+++++++   s +d+++F+F+
    KIAA0358    35 PELLRRYPLEDHTEFPLPPDVVFFCQPEGCLSVRQR-RMSLRDDTSFVFT 83   

                   LTdedGs.rrYGfCrrfy<-*
                   LTd+d   +rYG+C++fy   
    KIAA0358    84 LTDKDTGvTRYGICVNFY    101  

SM00799: domain 1 of 1, from 175 to 405: score 241.3, E = 7.9e-68
                   *->yapkcisCilSrlpffelFrkfLnelyrllasdssselllee.....
                       + +++ C+lS++pff++Fr++L +l+rl+   ++se ll ++ + +
    KIAA0358   175    STLTSL-CVLSHYPFFSTFRECLYTLKRLVD--CCSERLLGKklgip 218  

                   ..................................llislllspvPlPppg
                   ++ ++++  +  +++   +++++   ++ ++ + ++ +ll spvP  ++g
    KIAA0358   219 rgvqrdtmwriftgsllveekssallhdlreieaWIYRLLRSPVP--VSG 266  

                   gslvlsslsSyvslgppgdlvvpielqrPddselplidenfdlheLfecL
                   + +v       +++  p  l++++++ +Pd+s+++l+d  f+lh+++e+L
    KIAA0358   267 QKRVD------IEVL-PQELQPALTFALPDPSRFTLVD--FPLHLPLELL 307  

                   gvenvlqLfaslLlErrIifvSsnlstLsavieallaLLyPFvWQhvyIP
                   gv+ +lq+++++LlE++++++S++++ Ls++++a++a++yP+++++++IP
    KIAA0358   308 GVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIP 357  

                   iLPa...sLldvLsAPtPFiiGvhssffeevkeepdeeddvvvVDLDtg<
                   +LP+   s  ++L APtP+iiGv++sff + +++ +++d v++VDLD++ 
    KIAA0358   358 LLPTcmaSAEQLLLAPTPYIIGVPASFFLYKLDFKMPDD-VWLVDLDSN  405  

                   -*
                     
    KIAA0358     -    -    

SM00801: domain 1 of 1, from 488 to 558: score 62.0, E = 7.7e-14
                   *->lndeireaaFlrffnsaqllggllYrnflrkhpitdaptwrkepgpv
                      ++++ r +a++rffnsa++l+g  ++ + r        t+r +p+pv
    KIAA0358   488    VDVATR-VAMVRFFNSANVLQG--FQMHTR--------TLRLFPRPV 523  

                   isFdkesFlksrpsselrpFlkkfletQmFsqFIeer<-*
                   + F+  sFl srp+ +  pF +k+  tQ++++F e+    
    KIAA0358   524 VAFQAGSFLASRPR-Q-TPFAEKLARTQAVEYFGEWI    558  

//